How does the conformational landscape change on replacement in tetralin? A computational investigation with oxygen, sulfur, and selenium

IF 2.5 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Asif Iqubal Middya, Abhijit Chakraborty
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引用次数: 0

Abstract

Context

The oxygen, sulfur, and selenium derivatives of tetralin termed as isochroman (IC), isothiochroman (ITC), and isoselenochroman (ISC) showed interesting conformational patterns. In particular, ITC and IC have immense pharmacological significance. The twisted conformer is the global minimum in IC, where the bent is a transition state (TS) and remains 1100 ± 100 cm−1 higher. The bent form in ITC and ISC possesses the lowest energy. But, the twisted conformer lies higher by about 80 ± 20 cm−1 in ITC and 700 ± 50 cm−1 in ISC. The potential energy surfaces (PES) locate all the conformations and TSs. Molecular electrostatic potentials indicate the sites of electrophilic interactions, and the small energy difference between the minima in ITC predicts an interesting interplay of intermolecular interactions in suitable environments. The validity of the maximum hardness principle and minimum electrophilicity principles is checked. Frontier molecular orbitals show the change in electron densities on excitation, which are mostly π → π* in nature. Hyperconjugative interactions involving different σ and lone pair orbitals explain the change in conformational patterns in these molecules. We suggest some experiments to corroborate our findings.

Methods

Computations are performed with different functionals (B3LYP, M06-2X, and ωB97X-D) in DFT as well as ab initio methods (MP2 and CCSD) with 6-311G +  + (2d, 3p) and augmented cc-pVDZ as basis sets. Gaussian 09 is used for the above computations. PED analyses were performed by Veda 4 software. For viewing and plotting purposes, Gaussview 5.0 and Origin 8.5 are used.

四氢化萘置换后构象景观发生了怎样的变化?氧、硫和硒的计算研究。
背景:四氢萘的氧、硫和硒衍生物被称为等色胺(IC)、异硫铬胺(ITC)和异硒铬胺(ISC),它们显示出有趣的构象模式。特别是ITC和IC具有巨大的药理意义。在集成电路中,扭曲形是全局最小值,弯曲形是一个过渡态(TS),保持在1100±100 cm-1以上。ITC和ISC中的弯曲形式具有最低的能量。但在ITC和ISC中,扭曲构象分别高出约80±20 cm-1和700±50 cm-1。势能面(PES)定位了所有构象和TSs。分子静电电位指示亲电相互作用的位置,ITC最小值之间的小能量差预测了在合适环境下分子间相互作用的有趣相互作用。验证了最大硬度原理和最小亲电性原理的有效性。前沿分子轨道在激发下呈现电子密度的变化,本质上多为π→π*。涉及不同σ轨道和孤对轨道的超共轭相互作用解释了这些分子构象模式的变化。我们建议做一些实验来证实我们的发现。方法:采用DFT中不同的泛函(B3LYP、M06-2X、ωB97X-D)以及以6- 311g++ (2d、3p)和增广cc-pVDZ为基集的从头算方法(MP2和CCSD)进行计算。以上计算使用高斯09。采用Veda 4软件进行PED分析。为了查看和绘图,使用了Gaussview 5.0和Origin 8.5。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
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