Hue-Phuong Trac, Putikam Raghunath, Ming-Chang Lin
{"title":"Ab initio prediction for product stereo-specificity in the CH<sub>3</sub>CHI + O<sub>2</sub> reaction: formation of syn- vs anti-CH<sub>3</sub>CHOO.","authors":"Hue-Phuong Trac, Putikam Raghunath, Ming-Chang Lin","doi":"10.1007/s00894-025-06426-4","DOIUrl":null,"url":null,"abstract":"<p><strong>Context: </strong>The stereo-specific production of syn- and anti-CH<sub>3</sub>CHOO conformers from the CH<sub>3</sub>CHI + O<sub>2</sub> reaction has been investigated by ab initio quantum-chemical and statistical theory studies. The results of the studies clearly indicate that the [syn]:[anti] product ratio depends on both temperature and pressure of the reaction system, and is kinetically, rather than thermodynamically, controlled. Most experimental data measured near room temperature at 2-10 Torr He pressure agree with the predicted results in terms of either the absolute rate constants for syn- and anti-CH<sub>3</sub>CHOO production and/or the [syn]:[anti] product ratio. If the stereo-specificity of syn- and anti-CH<sub>3</sub>CHOO formation were controlled thermodynamically, one would predict [syn]:[anti] = 241:1 independent of pressure at 298 K, instead of (80 ± 10):(20 ± 10) measured experimentally or 86:14 predicted theoretically at 5-Torr He pressure.</p><p><strong>Methods: </strong>All calculations were performed using Gaussian 16 software. Geometry, frequency, and IRC analysis calculations were conducted at the B3LYP/Aug-cc-PVTZ level of theory. The potential energy surface of the system was computed at the CCSD(T)/Aug-cc-PVTZ//B3LYP/Aug-cc-PVTZ level. The rate constants for individual product channels in the reaction, including the direct production of IO + CH<sub>3</sub>CHO and the collisional deactivation of the excited CH<sub>3</sub>CHIO<sub>2</sub>* intermediate formed by the association of CH<sub>3</sub>CHI with O<sub>2</sub>, were predicted by statistical theory calculations using the Variflex code.</p>","PeriodicalId":651,"journal":{"name":"Journal of Molecular Modeling","volume":"31 8","pages":"205"},"PeriodicalIF":2.1000,"publicationDate":"2025-07-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12254064/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Molecular Modeling","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1007/s00894-025-06426-4","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Context: The stereo-specific production of syn- and anti-CH3CHOO conformers from the CH3CHI + O2 reaction has been investigated by ab initio quantum-chemical and statistical theory studies. The results of the studies clearly indicate that the [syn]:[anti] product ratio depends on both temperature and pressure of the reaction system, and is kinetically, rather than thermodynamically, controlled. Most experimental data measured near room temperature at 2-10 Torr He pressure agree with the predicted results in terms of either the absolute rate constants for syn- and anti-CH3CHOO production and/or the [syn]:[anti] product ratio. If the stereo-specificity of syn- and anti-CH3CHOO formation were controlled thermodynamically, one would predict [syn]:[anti] = 241:1 independent of pressure at 298 K, instead of (80 ± 10):(20 ± 10) measured experimentally or 86:14 predicted theoretically at 5-Torr He pressure.
Methods: All calculations were performed using Gaussian 16 software. Geometry, frequency, and IRC analysis calculations were conducted at the B3LYP/Aug-cc-PVTZ level of theory. The potential energy surface of the system was computed at the CCSD(T)/Aug-cc-PVTZ//B3LYP/Aug-cc-PVTZ level. The rate constants for individual product channels in the reaction, including the direct production of IO + CH3CHO and the collisional deactivation of the excited CH3CHIO2* intermediate formed by the association of CH3CHI with O2, were predicted by statistical theory calculations using the Variflex code.
期刊介绍:
The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling.
Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry.
Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.