A single-snapshot inverse solver for two-species graph model of tau pathology spreading in human Alzheimer's disease.

Q1 Computer Science
Zheyu Wen, Ali Ghafouri, George Biros
{"title":"A single-snapshot inverse solver for two-species graph model of tau pathology spreading in human Alzheimer's disease.","authors":"Zheyu Wen, Ali Ghafouri, George Biros","doi":"10.1186/s40708-025-00264-z","DOIUrl":null,"url":null,"abstract":"<p><p>We propose a method that uses a two-species ordinary differential equation (ODE) model for subject-specific misfolded tau protein spreading in Alzheimer's disease (AD) and calibrates it from magnetic resonance imaging (MRI) and positron emission tomography (PET) scans. The ODE model is a variant of the heterodimer Fisher-Kolmogorov (HFK) model. The unknown model parameters are the initial condition (IC) for tau and three scalar parameters representing the migration, proliferation, and clearance of tau proteins. Driven by imaging data, these parameters are estimated by formulating a constrained optimization problem with a sparsity regularization for the IC. This optimization problem is solved with a projection-based quasi-Newton algorithm. We evaluate the performance of our method on both synthetic and clinical data. Subjects are from the AD Neuroimaging Initiative (ADNI) datasets: 455 cognitively normal (CN), 212 mild cognitive impairment (MCI), and 45 AD subjects. We compare the performance of our approach to the commonly used Fisher-Kolmogorov (FK) model with a fixed IC at the entorhinal cortex (EC). Our method demonstrates an average improvement of 19.6% relative error compared to the FK model on the AD dataset. HFK also achieves an R-squared score of 0.591 for fitting AD data compared with 0.256 from FK model results with IC fixing at EC. The inverted IC from our scheme indicates that the EC is the most likely initial seeding region if subcortical regions are excluded from the analysis. However, other regions also have probability to be the IC seeding regions. Furthermore, for cases that have longitudinal data, we estimate a subject-specific AD onset time.</p>","PeriodicalId":37465,"journal":{"name":"Brain Informatics","volume":"12 1","pages":"18"},"PeriodicalIF":0.0000,"publicationDate":"2025-07-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Brain Informatics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1186/s40708-025-00264-z","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"Computer Science","Score":null,"Total":0}
引用次数: 0

Abstract

We propose a method that uses a two-species ordinary differential equation (ODE) model for subject-specific misfolded tau protein spreading in Alzheimer's disease (AD) and calibrates it from magnetic resonance imaging (MRI) and positron emission tomography (PET) scans. The ODE model is a variant of the heterodimer Fisher-Kolmogorov (HFK) model. The unknown model parameters are the initial condition (IC) for tau and three scalar parameters representing the migration, proliferation, and clearance of tau proteins. Driven by imaging data, these parameters are estimated by formulating a constrained optimization problem with a sparsity regularization for the IC. This optimization problem is solved with a projection-based quasi-Newton algorithm. We evaluate the performance of our method on both synthetic and clinical data. Subjects are from the AD Neuroimaging Initiative (ADNI) datasets: 455 cognitively normal (CN), 212 mild cognitive impairment (MCI), and 45 AD subjects. We compare the performance of our approach to the commonly used Fisher-Kolmogorov (FK) model with a fixed IC at the entorhinal cortex (EC). Our method demonstrates an average improvement of 19.6% relative error compared to the FK model on the AD dataset. HFK also achieves an R-squared score of 0.591 for fitting AD data compared with 0.256 from FK model results with IC fixing at EC. The inverted IC from our scheme indicates that the EC is the most likely initial seeding region if subcortical regions are excluded from the analysis. However, other regions also have probability to be the IC seeding regions. Furthermore, for cases that have longitudinal data, we estimate a subject-specific AD onset time.

人类阿尔茨海默病中tau病理传播的双物种图模型的单快照反求解器。
我们提出了一种方法,该方法使用两种常微分方程(ODE)模型来研究阿尔茨海默病(AD)中受试者特异性错误折叠的tau蛋白扩散,并通过磁共振成像(MRI)和正电子发射断层扫描(PET)对其进行校准。ODE模型是异二聚体Fisher-Kolmogorov (HFK)模型的一种变体。未知的模型参数是tau蛋白的初始条件(initial condition, IC)和代表tau蛋白迁移、增殖和清除的三个标量参数。在成像数据的驱动下,通过为集成电路制定具有稀疏正则化的约束优化问题来估计这些参数,并使用基于投影的准牛顿算法求解该优化问题。我们在合成和临床数据上评估了我们的方法的性能。受试者来自AD神经影像学倡议(ADNI)数据集:455名认知正常(CN), 212名轻度认知障碍(MCI)和45名AD受试者。我们将该方法的性能与常用的Fisher-Kolmogorov (FK)模型进行了比较,该模型具有固定的内嗅皮质(EC) IC。与AD数据集上的FK模型相比,我们的方法平均提高了19.6%的相对误差。与IC固定在EC处的FK模型结果相比,HFK模型拟合AD数据的r平方得分为0.591,r平方得分为0.256。从我们的方案中得到的反向IC表明,如果从分析中排除皮层下区域,EC是最可能的初始播种区域。但是,其他区域也有可能成为IC播种区域。此外,对于有纵向数据的病例,我们估计了受试者特定的AD发病时间。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Brain Informatics
Brain Informatics Computer Science-Computer Science Applications
CiteScore
9.50
自引率
0.00%
发文量
27
审稿时长
13 weeks
期刊介绍: Brain Informatics is an international, peer-reviewed, interdisciplinary open-access journal published under the brand SpringerOpen, which provides a unique platform for researchers and practitioners to disseminate original research on computational and informatics technologies related to brain. This journal addresses the computational, cognitive, physiological, biological, physical, ecological and social perspectives of brain informatics. It also welcomes emerging information technologies and advanced neuro-imaging technologies, such as big data analytics and interactive knowledge discovery related to various large-scale brain studies and their applications. This journal will publish high-quality original research papers, brief reports and critical reviews in all theoretical, technological, clinical and interdisciplinary studies that make up the field of brain informatics and its applications in brain-machine intelligence, brain-inspired intelligent systems, mental health and brain disorders, etc. The scope of papers includes the following five tracks: Track 1: Cognitive and Computational Foundations of Brain Science Track 2: Human Information Processing Systems Track 3: Brain Big Data Analytics, Curation and Management Track 4: Informatics Paradigms for Brain and Mental Health Research Track 5: Brain-Machine Intelligence and Brain-Inspired Computing
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信