{"title":"Enhanced 1,4-Butanediol de Novo Synthesis in <i>Yarrowia lipolytica</i> by Incorporating Dynamic Regulation of Thiamine.","authors":"Hongwei Guo, Yaqing Zeng, Mengqi Zhu, Tianqiu Huang, Weigao Wang, Catherine Madzak, Jun Zhao, Xiaohui Sun, Hongwen Chen, Guo Chen","doi":"10.1021/acssynbio.5c00015","DOIUrl":null,"url":null,"abstract":"<p><p>1,4-Butanediol (1,4-BDO), one of the most important platform diols, has been widely utilized as a comonomer to manufacture several million tons of polymers every year. Microbial synthesis of the non-natural 1,4-BDO is extremely challenging. Although several artificial routes have been proposed and applied in <i>Escherichia coli</i>, among them, the branching metabolic flux from α-ketoglutarate (α-KG) to the artificial route was considered the most thermodynamically efficient solution. Establishing a 1,4-BDO synthesis route in <i>Yarrowia lipolytica</i>, a native α-KG and succinate hyperproducer, should have high potential. A CoA-dependent 1,4-BDO synthesis route was introduced into <i>Y. lipolytica</i>, followed by the investigation of rate-limiting steps, optimization of the thiamine dosage, improvement of the precursor and cofactor availability, and deletion of the competition step. It was illustrated that 1,4-BDO synthesis was susceptible to metabolic throughput of the GABA-succinate shunt and NADPH availability. Also, there was a trade-off between cellular growth and 1,4-BDO synthesis. A combinational strategy, in which hereditary dynamic regulation of thiamine was incorporated into those positive metabolic modifications, was implemented, and 6217.1 mg·L<sup>-1</sup> 1,4-BDO was achieved under the batch fermentation model. This work also demonstrated the high potential and capacity for biosynthesis of non-nature chemicals from TCA intermediates in the yeast cells, and provided a novel clue to rebalance the metabolic flux between the heterologous pathway and central metabolism.</p>","PeriodicalId":26,"journal":{"name":"ACS Synthetic Biology","volume":" ","pages":"2572-2583"},"PeriodicalIF":3.7000,"publicationDate":"2025-07-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Synthetic Biology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1021/acssynbio.5c00015","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/7/3 0:00:00","PubModel":"Epub","JCR":"Q1","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 0
Abstract
1,4-Butanediol (1,4-BDO), one of the most important platform diols, has been widely utilized as a comonomer to manufacture several million tons of polymers every year. Microbial synthesis of the non-natural 1,4-BDO is extremely challenging. Although several artificial routes have been proposed and applied in Escherichia coli, among them, the branching metabolic flux from α-ketoglutarate (α-KG) to the artificial route was considered the most thermodynamically efficient solution. Establishing a 1,4-BDO synthesis route in Yarrowia lipolytica, a native α-KG and succinate hyperproducer, should have high potential. A CoA-dependent 1,4-BDO synthesis route was introduced into Y. lipolytica, followed by the investigation of rate-limiting steps, optimization of the thiamine dosage, improvement of the precursor and cofactor availability, and deletion of the competition step. It was illustrated that 1,4-BDO synthesis was susceptible to metabolic throughput of the GABA-succinate shunt and NADPH availability. Also, there was a trade-off between cellular growth and 1,4-BDO synthesis. A combinational strategy, in which hereditary dynamic regulation of thiamine was incorporated into those positive metabolic modifications, was implemented, and 6217.1 mg·L-1 1,4-BDO was achieved under the batch fermentation model. This work also demonstrated the high potential and capacity for biosynthesis of non-nature chemicals from TCA intermediates in the yeast cells, and provided a novel clue to rebalance the metabolic flux between the heterologous pathway and central metabolism.
期刊介绍:
The journal is particularly interested in studies on the design and synthesis of new genetic circuits and gene products; computational methods in the design of systems; and integrative applied approaches to understanding disease and metabolism.
Topics may include, but are not limited to:
Design and optimization of genetic systems
Genetic circuit design and their principles for their organization into programs
Computational methods to aid the design of genetic systems
Experimental methods to quantify genetic parts, circuits, and metabolic fluxes
Genetic parts libraries: their creation, analysis, and ontological representation
Protein engineering including computational design
Metabolic engineering and cellular manufacturing, including biomass conversion
Natural product access, engineering, and production
Creative and innovative applications of cellular programming
Medical applications, tissue engineering, and the programming of therapeutic cells
Minimal cell design and construction
Genomics and genome replacement strategies
Viral engineering
Automated and robotic assembly platforms for synthetic biology
DNA synthesis methodologies
Metagenomics and synthetic metagenomic analysis
Bioinformatics applied to gene discovery, chemoinformatics, and pathway construction
Gene optimization
Methods for genome-scale measurements of transcription and metabolomics
Systems biology and methods to integrate multiple data sources
in vitro and cell-free synthetic biology and molecular programming
Nucleic acid engineering.