Phylogenomics reveals taxonomic challenges in Calibrachoa (Solanaceae) and sheds light on the origins of cultivated million bells

IF 3.6 1区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Alice Backes , Leonardo T. Gonçalves , Pedro H. Pezzi, Loreta B. Freitas
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引用次数: 0

Abstract

Phylogenies are essential for understanding evolutionary relationships, testing species boundaries, and defining species status. However, hybridization and incomplete lineage sorting (ILS) can obscure these relationships in recently diversified plant lineages by creating conflicting signals across the genome and reducing phylogenetic resolution. Calibrachoa (million bells), a Neotropical genus of ornamental plants with high ecological diversity, underwent rapid diversification during the Pleistocene, leading to extensive ILS and interspecific hybridization. In this study, we sampled multiple individuals from all recognized species, a potential new species, and a commercial cultivar of Calibrachoa. We used genome-wide genotyping to investigate phylogenetic relationships, species cohesion, hybridization, and the origin of one commercial cultivar. Our results confirm the division of the genus into two subgenera: Calibrachoa sensu stricto and Stimomphis. Within Stimomphis, we observed paraphyly and polyphyly, with low support for several phylogenetic nodes. This uncertainty likely reflects challenges in species delimitation, high ILS due to recent diversification, and ongoing hybridization. We also confirm the hybrid origin of the commercial cultivar. Our findings provide new insights into the evolutionary history of Calibrachoa, improving our understanding of its taxonomy and hybridization dynamics. These results illustrate the need to account for reticulate evolution and ILS when resolving phylogenies in rapidly diversifying plant groups.

Abstract Image

系统基因组学揭示了calbrachoa(茄科)的分类挑战,并揭示了栽培百万个铃铛的起源。
系统发生学对于理解进化关系、测试物种边界和确定物种状态至关重要。然而,杂交和不完全谱系分类(ILS)会在最近多样化的植物谱系中产生相互冲突的信号,从而降低系统发育分辨率,从而模糊这些关系。菖蒲属(Calibrachoa, million bells)是具有高度生态多样性的新热带观赏植物属,在更新世经历了快速的多样化,导致了广泛的ILS和种间杂交。在这项研究中,我们从所有已知的物种、一个潜在的新种和一个商业栽培品系中取样了多个个体。我们使用全基因组基因分型研究了一个商业栽培品种的系统发育关系、物种内聚、杂交和起源。我们的结果证实了该属可分为两个亚属:感觉狭窄的Calibrachoa和Stimomphis。在Stimomphis中,我们观察到paraphyly和polyphyly,对几个系统发育节点的支持度较低。这种不确定性可能反映了物种划分的挑战,最近多样化导致的高ILS以及正在进行的杂交。我们还确认了商业品种的杂交起源。我们的发现为甲鱼的进化史提供了新的见解,提高了我们对其分类和杂交动力学的理解。这些结果表明,在解决快速多样化的植物类群的系统发育问题时,需要考虑网状进化和ILS。
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来源期刊
Molecular Phylogenetics and Evolution
Molecular Phylogenetics and Evolution 生物-进化生物学
CiteScore
7.50
自引率
7.30%
发文量
249
审稿时长
7.5 months
期刊介绍: Molecular Phylogenetics and Evolution is dedicated to bringing Darwin''s dream within grasp - to "have fairly true genealogical trees of each great kingdom of Nature." The journal provides a forum for molecular studies that advance our understanding of phylogeny and evolution, further the development of phylogenetically more accurate taxonomic classifications, and ultimately bring a unified classification for all the ramifying lines of life. Phylogeographic studies will be considered for publication if they offer EXCEPTIONAL theoretical or empirical advances.
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