Modeling the use of transient ligand binding information by AMPA receptors.

IF 3.5 2区 生物学 Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Helena Braunstein, Alejandra C Ventura, Alejandro Colman-Lerner
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引用次数: 0

Abstract

Glutamate mediates fast excitatory neurotransmission through α-amino-3-hydroxy-5-methyl-4-isoxazole propionic acid (AMPA)-type glutamate receptors in the central nervous system. Although it is well known that the glutamate affinity for AMPA receptors is submicromolar, ligand-dependent currents are observed only at submillimolar glutamate concentrations, suggesting a non-equilibrium mechanism of dose-dependent signaling. Here, we developed a mathematical model that leverages published reaction rates to demonstrate that AMPA receptors operate within a pre-equilibrium sensing and signaling (PRESS) regime. By functioning before equilibrium binding, AMPARs exploit a transient dynamic range at high ligand concentrations. Our model reveals that fast desensitization is a key transition enabling this PRESS mechanism. Regulators of this desensitization, such as transmembrane AMPAR regulatory proteins TARP, germ cell-specific gene 1-like protein and cornichon homolog auxiliary proteins (CNIH2/3), thus modulate AMPAR dynamic range by modifying the time window in which these receptors may use pre-equilibrium information. We speculate that the use of PRESS by AMPARs helps restrict the postsynaptic area of action of this fast transmission. Other receptors with fast desensitization may also take advantage of PRESS to accurately control dose-dependent responses.

AMPA受体利用瞬时配体结合信息的建模。
谷氨酸通过α-氨基-3-羟基-5-甲基-4-异恶唑丙酸(AMPA)型谷氨酸受体介导中枢神经系统的快速兴奋性神经传递。虽然众所周知谷氨酸对AMPA受体的亲和力是亚微摩尔,但只有在亚毫摩尔谷氨酸浓度下才观察到配体依赖性电流,这表明剂量依赖性信号传导的非平衡机制。在这里,我们开发了一个数学模型,利用已发表的反应速率来证明AMPA受体在预平衡传感和信号(PRESS)制度下运作。通过在平衡结合之前发挥作用,ampar在高配体浓度下具有瞬时动态范围。我们的模型显示,快速脱敏是实现这种PRESS机制的关键转变。这种脱敏的调节因子,如跨膜AMPAR调节蛋白TARP,生殖细胞特异性基因1样蛋白和cornichon同源辅助蛋白(CNIH2/3),因此通过改变这些受体可能使用预平衡信息的时间窗口来调节AMPAR动态范围。我们推测AMPARs使用PRESS有助于限制这种快速传递的突触后作用区域。其他具有快速脱敏的受体也可以利用PRESS来精确控制剂量依赖性反应。
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来源期刊
NPJ Systems Biology and Applications
NPJ Systems Biology and Applications Mathematics-Applied Mathematics
CiteScore
5.80
自引率
0.00%
发文量
46
审稿时长
8 weeks
期刊介绍: npj Systems Biology and Applications is an online Open Access journal dedicated to publishing the premier research that takes a systems-oriented approach. The journal aims to provide a forum for the presentation of articles that help define this nascent field, as well as those that apply the advances to wider fields. We encourage studies that integrate, or aid the integration of, data, analyses and insight from molecules to organisms and broader systems. Important areas of interest include not only fundamental biological systems and drug discovery, but also applications to health, medical practice and implementation, big data, biotechnology, food science, human behaviour, broader biological systems and industrial applications of systems biology. We encourage all approaches, including network biology, application of control theory to biological systems, computational modelling and analysis, comprehensive and/or high-content measurements, theoretical, analytical and computational studies of system-level properties of biological systems and computational/software/data platforms enabling such studies.
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