A supervised machine learning approach with feature selection for sex-specific biomarker prediction.

IF 3.5 2区 生物学 Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Luke Meyer, Danielle Mulder, Joshua Wallace
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引用次数: 0

Abstract

Biomarkers are crucial in aiding in disease diagnosis, prognosis, and treatment selection. Machine learning (ML) has emerged as an effective tool for identifying novel biomarkers and enhancing predictive modelling. However, sex-based bias in ML algorithms remains a concern. This study developed a supervised ML model to predict nine common clinical biomarkers, including triglycerides, BMI, waist circumference, systolic blood pressure, blood glucose, uric acid, urinary albumin-to-creatinine ratio, high-density lipoproteins, and albuminuria. The model's predictions were within 5-10% error of actual values. For predictions within 10% error, the top performing models were waist circumference, albuminuria, BMI, blood glucose and systolic blood pressure, with males scoring higher than females, followed by the combined data set containing sex as an input feature and the combined data without sex as an input feature performing the poorest. This study highlighted the benefits of stratifying data according to sex for ML based models.

一种带有特征选择的有监督机器学习方法用于性别特异性生物标志物预测。
生物标志物在帮助疾病诊断、预后和治疗选择方面是至关重要的。机器学习(ML)已成为识别新型生物标志物和增强预测建模的有效工具。然而,机器学习算法中基于性别的偏见仍然是一个问题。本研究建立了一个有监督的ML模型来预测9种常见的临床生物标志物,包括甘油三酯、BMI、腰围、收缩压、血糖、尿酸、尿白蛋白与肌酐比、高密度脂蛋白和蛋白尿。该模型的预测与实际值误差在5-10%以内。对于误差在10%以内的预测,表现最好的模型是腰围、蛋白尿、BMI、血糖和收缩压,其中男性的得分高于女性,其次是包含性别作为输入特征的组合数据集,而不包含性别作为输入特征的组合数据集表现最差。这项研究强调了根据性别对基于ML的模型进行数据分层的好处。
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来源期刊
NPJ Systems Biology and Applications
NPJ Systems Biology and Applications Mathematics-Applied Mathematics
CiteScore
5.80
自引率
0.00%
发文量
46
审稿时长
8 weeks
期刊介绍: npj Systems Biology and Applications is an online Open Access journal dedicated to publishing the premier research that takes a systems-oriented approach. The journal aims to provide a forum for the presentation of articles that help define this nascent field, as well as those that apply the advances to wider fields. We encourage studies that integrate, or aid the integration of, data, analyses and insight from molecules to organisms and broader systems. Important areas of interest include not only fundamental biological systems and drug discovery, but also applications to health, medical practice and implementation, big data, biotechnology, food science, human behaviour, broader biological systems and industrial applications of systems biology. We encourage all approaches, including network biology, application of control theory to biological systems, computational modelling and analysis, comprehensive and/or high-content measurements, theoretical, analytical and computational studies of system-level properties of biological systems and computational/software/data platforms enabling such studies.
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