{"title":"A supervised machine learning approach with feature selection for sex-specific biomarker prediction.","authors":"Luke Meyer, Danielle Mulder, Joshua Wallace","doi":"10.1038/s41540-025-00523-z","DOIUrl":null,"url":null,"abstract":"<p><p>Biomarkers are crucial in aiding in disease diagnosis, prognosis, and treatment selection. Machine learning (ML) has emerged as an effective tool for identifying novel biomarkers and enhancing predictive modelling. However, sex-based bias in ML algorithms remains a concern. This study developed a supervised ML model to predict nine common clinical biomarkers, including triglycerides, BMI, waist circumference, systolic blood pressure, blood glucose, uric acid, urinary albumin-to-creatinine ratio, high-density lipoproteins, and albuminuria. The model's predictions were within 5-10% error of actual values. For predictions within 10% error, the top performing models were waist circumference, albuminuria, BMI, blood glucose and systolic blood pressure, with males scoring higher than females, followed by the combined data set containing sex as an input feature and the combined data without sex as an input feature performing the poorest. This study highlighted the benefits of stratifying data according to sex for ML based models.</p>","PeriodicalId":19345,"journal":{"name":"NPJ Systems Biology and Applications","volume":"11 1","pages":"69"},"PeriodicalIF":3.5000,"publicationDate":"2025-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12219308/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"NPJ Systems Biology and Applications","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1038/s41540-025-00523-z","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"MATHEMATICAL & COMPUTATIONAL BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Biomarkers are crucial in aiding in disease diagnosis, prognosis, and treatment selection. Machine learning (ML) has emerged as an effective tool for identifying novel biomarkers and enhancing predictive modelling. However, sex-based bias in ML algorithms remains a concern. This study developed a supervised ML model to predict nine common clinical biomarkers, including triglycerides, BMI, waist circumference, systolic blood pressure, blood glucose, uric acid, urinary albumin-to-creatinine ratio, high-density lipoproteins, and albuminuria. The model's predictions were within 5-10% error of actual values. For predictions within 10% error, the top performing models were waist circumference, albuminuria, BMI, blood glucose and systolic blood pressure, with males scoring higher than females, followed by the combined data set containing sex as an input feature and the combined data without sex as an input feature performing the poorest. This study highlighted the benefits of stratifying data according to sex for ML based models.
期刊介绍:
npj Systems Biology and Applications is an online Open Access journal dedicated to publishing the premier research that takes a systems-oriented approach. The journal aims to provide a forum for the presentation of articles that help define this nascent field, as well as those that apply the advances to wider fields. We encourage studies that integrate, or aid the integration of, data, analyses and insight from molecules to organisms and broader systems. Important areas of interest include not only fundamental biological systems and drug discovery, but also applications to health, medical practice and implementation, big data, biotechnology, food science, human behaviour, broader biological systems and industrial applications of systems biology.
We encourage all approaches, including network biology, application of control theory to biological systems, computational modelling and analysis, comprehensive and/or high-content measurements, theoretical, analytical and computational studies of system-level properties of biological systems and computational/software/data platforms enabling such studies.