An explainable-by-design end-to-end AI framework based on prototypical part learning for lesion detection and classification in Digital Breast Tomosynthesis images.

IF 4.1 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Computational and structural biotechnology journal Pub Date : 2025-06-10 eCollection Date: 2025-01-01 DOI:10.1016/j.csbj.2025.06.008
Andrea Berti, Camilla Scapicchio, Chiara Iacconi, Charlotte Marguerite Lucille Trombadori, Maria Evelina Fantacci, Alessandra Retico, Sara Colantonio
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引用次数: 0

Abstract

Background and objective: Breast cancer is the most common cancer among women worldwide, making early detection through breast screening crucial for improving patient outcomes. Digital Breast Tomosynthesis (DBT) is an advanced radiographic technique that enhances clarity over traditional mammography by compiling multiple X-ray images into a 3D reconstruction, thereby improving cancer detection rates. However, the large data volume of DBT poses a challenge for timely analysis. This study aims to introduce a transparent AI system that not only provides a prediction but also an explanation of that prediction, expediting the analysis of DBT scans while ensuring interpretability.

Methods: The study employs a two-stage deep learning process. The first stage uses state-of-the-art Neural Network (NN) models, specifically YOLOv5 and YOLOv8, to detect lesions within the scans. An ensemble method is also explored to enhance detection capabilities. The second stage involves classifying the identified lesions using ProtoPNet, an inherently transparent NN that leverages prototypical part learning to distinguish between benign and cancerous lesions. The system facilitates clear interpretability in decision-making, which is crucial for medical diagnostics.

Results: The performance of the AI system demonstrates competitive metric results for both detection and classification tasks (a recall of 0.76 and an accuracy of 0.70, respectively). The evaluation metrics, together with the validation by expert radiologists through clinical feedback, highlight the potential of the system for future clinical relevance. Despite challenges such as dataset limitations and the need for more accurate ground truth annotations, which limit the final values of the metrics, the approach shows significant advancement in applying AI to DBT scans.

Conclusions: This study contributes to the growing field of AI in breast cancer screening by emphasizing the need for systems that are not only accurate but also transparent and interpretable. The proposed AI system marks a significant step forward in the timely and accurate analysis of DBT scans, with potential implications for improving early breast cancer detection and patient outcomes.

基于原型部分学习的端到端AI框架,用于数字乳腺断层合成图像的病变检测和分类。
背景和目的:乳腺癌是全世界女性中最常见的癌症,通过乳房筛查早期发现对于改善患者预后至关重要。数字乳腺断层合成(DBT)是一种先进的放射摄影技术,通过将多个x射线图像汇编成三维重建,从而提高了传统乳房x线摄影的清晰度,从而提高了癌症检出率。然而,DBT的大数据量给及时分析带来了挑战。本研究旨在引入一个透明的人工智能系统,该系统不仅提供预测,还提供预测的解释,加快DBT扫描的分析,同时确保可解释性。方法:本研究采用两阶段深度学习过程。第一阶段使用最先进的神经网络(NN)模型,特别是YOLOv5和YOLOv8,来检测扫描中的病变。本文还探讨了一种集成方法来提高检测能力。第二阶段涉及使用ProtoPNet对已识别的病变进行分类,ProtoPNet是一种固有透明的神经网络,利用原型部分学习来区分良性和癌性病变。该系统有助于决策的清晰可解释性,这对医学诊断至关重要。结果:人工智能系统的性能在检测和分类任务上都展示了具有竞争力的指标结果(召回率分别为0.76,准确率为0.70)。评估指标,以及放射科专家通过临床反馈进行的验证,突出了该系统在未来临床相关性方面的潜力。尽管存在数据集限制和需要更准确的地面真值注释等挑战,这限制了指标的最终值,但该方法在将人工智能应用于DBT扫描方面显示出显着的进步。结论:本研究通过强调对不仅准确而且透明和可解释的系统的需求,有助于人工智能在乳腺癌筛查领域的发展。提出的人工智能系统标志着在及时准确地分析DBT扫描方面迈出了重要一步,对改善早期乳腺癌检测和患者预后具有潜在意义。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Computational and structural biotechnology journal
Computational and structural biotechnology journal Biochemistry, Genetics and Molecular Biology-Biophysics
CiteScore
9.30
自引率
3.30%
发文量
540
审稿时长
6 weeks
期刊介绍: Computational and Structural Biotechnology Journal (CSBJ) is an online gold open access journal publishing research articles and reviews after full peer review. All articles are published, without barriers to access, immediately upon acceptance. The journal places a strong emphasis on functional and mechanistic understanding of how molecular components in a biological process work together through the application of computational methods. Structural data may provide such insights, but they are not a pre-requisite for publication in the journal. Specific areas of interest include, but are not limited to: Structure and function of proteins, nucleic acids and other macromolecules Structure and function of multi-component complexes Protein folding, processing and degradation Enzymology Computational and structural studies of plant systems Microbial Informatics Genomics Proteomics Metabolomics Algorithms and Hypothesis in Bioinformatics Mathematical and Theoretical Biology Computational Chemistry and Drug Discovery Microscopy and Molecular Imaging Nanotechnology Systems and Synthetic Biology
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