Daniella B. de Miranda, Henrique C. Silva Junior, Glaucio B. Ferreira
{"title":"QTAIM topological analyses of zinc(II), cadmium(II), and mercury(II) xanthate complexes","authors":"Daniella B. de Miranda, Henrique C. Silva Junior, Glaucio B. Ferreira","doi":"10.1007/s00894-025-06422-8","DOIUrl":null,"url":null,"abstract":"<div><h3>Context</h3><p>Environmental contamination by heavy metals is increasing due to population growth and industrial activity, which is having a major impact on the environment. Xanthates, which form stable complexes with metals, are used to remove them from aqueous environments. Known for their role in ore flotation, these compounds also have applications in the biological field and thin film production. Due to the versatility of the coordination of xanthates to metal centers, it is essential to understand the nature of the metal–ligand bonds in these systems. Given their coordination versatility, understanding metal–ligand interactions is essential. Therefore, this study investigates the nature of the metal–ligand bonds of compounds containing <i>n</i>-propyl xanthate and water, with Zn<sup>2+</sup>, Cd<sup>2+</sup>, and Hg<sup>2+</sup> ions. QTAIM analysis revealed that the metal-OH₂ bonds are predominantly electrostatic, while the metal-S bonds are partially covalent, with an increasing trend of covalency along group 12 (Zn<sup>2</sup>⁺ < Cd<sup>2</sup>⁺ < Hg<sup>2</sup>⁺), especially in the neutral and bidentate complexes, corroborating Pearson’s theory.</p><h3>Methods</h3><p>QTAIM analysis was carried out on 30 structures of <i>n</i>-propyl xanthate complexes with group 12 metals, which were previously investigated in earlier studies. These compounds had already been analyzed through energy decomposition analysis, providing a basis for comparison with the QTAIM results presented in this work. QTAIM was performed using wfx files generated at the DFT level (M06L/def2-TZVP) and analyzed with Multiwfn. Wavefunction (wfx) files, which contain detailed information on the electronic density distribution essential for accurate topological analysis, were generated and analyzed using Multiwfn to characterize the metal–ligand interactions.</p><h3>Graphical abstract</h3>\n<div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":651,"journal":{"name":"Journal of Molecular Modeling","volume":"31 7","pages":""},"PeriodicalIF":2.5000,"publicationDate":"2025-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Molecular Modeling","FirstCategoryId":"92","ListUrlMain":"https://link.springer.com/article/10.1007/s00894-025-06422-8","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Context
Environmental contamination by heavy metals is increasing due to population growth and industrial activity, which is having a major impact on the environment. Xanthates, which form stable complexes with metals, are used to remove them from aqueous environments. Known for their role in ore flotation, these compounds also have applications in the biological field and thin film production. Due to the versatility of the coordination of xanthates to metal centers, it is essential to understand the nature of the metal–ligand bonds in these systems. Given their coordination versatility, understanding metal–ligand interactions is essential. Therefore, this study investigates the nature of the metal–ligand bonds of compounds containing n-propyl xanthate and water, with Zn2+, Cd2+, and Hg2+ ions. QTAIM analysis revealed that the metal-OH₂ bonds are predominantly electrostatic, while the metal-S bonds are partially covalent, with an increasing trend of covalency along group 12 (Zn2⁺ < Cd2⁺ < Hg2⁺), especially in the neutral and bidentate complexes, corroborating Pearson’s theory.
Methods
QTAIM analysis was carried out on 30 structures of n-propyl xanthate complexes with group 12 metals, which were previously investigated in earlier studies. These compounds had already been analyzed through energy decomposition analysis, providing a basis for comparison with the QTAIM results presented in this work. QTAIM was performed using wfx files generated at the DFT level (M06L/def2-TZVP) and analyzed with Multiwfn. Wavefunction (wfx) files, which contain detailed information on the electronic density distribution essential for accurate topological analysis, were generated and analyzed using Multiwfn to characterize the metal–ligand interactions.
期刊介绍:
The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling.
Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry.
Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.