NMR in the Age of Modern Biomedical Research and Drug Discovery.

IF 4.5 2区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY
Xiuxiu Lu, Wazo Myint, Christine S Muli, Mioara Larion, Hiroshi Matsuo, Kylie J Walters
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引用次数: 0

Abstract

The success of artificial intelligence for structure prediction has led to forecasts of a reduced need for experimental structural biology. Here, we focus on nuclear magnetic resonance (NMR) spectroscopy and its various applications to biomedical research, including and extending beyond structural biology. As a structural tool, NMR is highly complementary to X-ray crystallography and cryo-electron microscopy (cryo-EM) and uniquely suited for studies of intrinsically disordered and dynamic systems in real time. It produces spectral fingerprints of biomolecules at the atomic scale to provide information on the structure, interactions, and motions that occur in solution. We focus on the power of NMR to characterize moderately sized dynamic systems, identify and validate the binding of small molecule ligands to biomolecular targets, and its capacity to further develop and be empowered by artificial intelligence-based structural prediction software. Experimental structural biology begins with sample preparation, and we present recent advancements for overcoming hurdles associated with reconstitution of biological systems for NMR studies and ongoing challenges, including in the application of NMR for cell-based research. NMR is aptly suited to bench-to-bedside efforts for its ability to do metabolomic profiling and follow drug response. We present the capacity of NMR to delve into complexities that are the foundation of biological function and focus on its ongoing challenges and opportunities to apply NMR for the advancement of biomedical research.

核磁共振在现代生物医学研究和药物发现的时代。
人工智能在结构预测方面的成功导致了对实验结构生物学需求的减少。在这里,我们专注于核磁共振(NMR)光谱及其在生物医学研究中的各种应用,包括并扩展到结构生物学之外。作为一种结构工具,核磁共振与x射线晶体学和低温电子显微镜(cryo-EM)具有很强的互补性,非常适合于本质无序和动态系统的实时研究。它在原子尺度上产生生物分子的光谱指纹,以提供有关溶液中发生的结构,相互作用和运动的信息。我们专注于核磁共振表征中等大小的动态系统的能力,识别和验证小分子配体与生物分子靶标的结合,以及其进一步发展的能力,并通过基于人工智能的结构预测软件得到授权。实验结构生物学从样品制备开始,我们介绍了克服核磁共振研究中与生物系统重构相关的障碍和正在面临的挑战的最新进展,包括核磁共振在细胞研究中的应用。核磁共振非常适合从实验室到床边的工作,因为它能够进行代谢组学分析和跟踪药物反应。我们介绍了核磁共振深入研究生物功能基础的复杂性的能力,并重点介绍了应用核磁共振促进生物医学研究的持续挑战和机遇。
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来源期刊
Journal of Molecular Biology
Journal of Molecular Biology 生物-生化与分子生物学
CiteScore
11.30
自引率
1.80%
发文量
412
审稿时长
28 days
期刊介绍: Journal of Molecular Biology (JMB) provides high quality, comprehensive and broad coverage in all areas of molecular biology. The journal publishes original scientific research papers that provide mechanistic and functional insights and report a significant advance to the field. The journal encourages the submission of multidisciplinary studies that use complementary experimental and computational approaches to address challenging biological questions. Research areas include but are not limited to: Biomolecular interactions, signaling networks, systems biology; Cell cycle, cell growth, cell differentiation; Cell death, autophagy; Cell signaling and regulation; Chemical biology; Computational biology, in combination with experimental studies; DNA replication, repair, and recombination; Development, regenerative biology, mechanistic and functional studies of stem cells; Epigenetics, chromatin structure and function; Gene expression; Membrane processes, cell surface proteins and cell-cell interactions; Methodological advances, both experimental and theoretical, including databases; Microbiology, virology, and interactions with the host or environment; Microbiota mechanistic and functional studies; Nuclear organization; Post-translational modifications, proteomics; Processing and function of biologically important macromolecules and complexes; Molecular basis of disease; RNA processing, structure and functions of non-coding RNAs, transcription; Sorting, spatiotemporal organization, trafficking; Structural biology; Synthetic biology; Translation, protein folding, chaperones, protein degradation and quality control.
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