Complete genome sequence data of Xylella fastidiosa subspecies multiplex ST88 and ST89 indicate distinct introductions in France

IF 1.4 Q3 MULTIDISCIPLINARY SCIENCES
Amandine Cunty , Jessica Dittmer , Déborah Merda , Bruno Legendre , Benoit Remenant , Yannick Blanchard , Sophie Cesbron , Marie-Agnès Jacques , Pascal Gentit , Anne-Laure Boutigny
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引用次数: 0

Abstract

Xylella fastidiosa is a Gram-negative bacterium native to the Americas and classified as a priority pest under EU regulations. This xylem-limited plant pathogenic bacterium has a wide host range and is transmitted by insect vectors. Since 2013, X. fastidiosa has been identified in several European countries including Italy, France, Spain and Portugal, with different subspecies and sequence types (ST) detected. Since 2015, most strains identified in France are of the subspecies multiplex, specifically ST6 and ST7. Two new STs of X. fastidiosa subsp. multiplex, ST88 and ST89, were recently detected in the region Provence-Alpes-Côte d’Azur (PACA), and one strain of each ST has been isolated from infected plants. To investigate the phylogenetic relationships between the four STs present in France, a complete circular genome and a single-contig genome were assembled for the ST89 and ST88 strains, respectively, by combining PacBio and Illumina sequencing data. A phylogenomic analysis was performed to investigate the phylogenetic position and potential origin of these new strains. This data article contributes to improve our knowledge of the diversity and origin of X. fastidiosa subsp. multiplex in France and Europe.
苛养木杆菌多重亚种ST88和ST89的全基因组序列数据表明在法国有不同的引种
苛养木杆菌是一种原产于美洲的革兰氏阴性细菌,根据欧盟法规被列为优先害虫。这种局限于木质部的植物致病菌寄主范围广,通过昆虫媒介传播。2013年以来,在意大利、法国、西班牙和葡萄牙等多个欧洲国家发现了苛养X.,检测到不同亚种和序列型(ST)。自2015年以来,在法国发现的大多数毒株为多重亚种,特别是ST6和ST7。苛养双歧杆菌亚种的两个新STs。最近在Provence-Alpes-Côte d’azur地区(PACA)发现了多重菌株ST88和ST89,每种菌株已从受感染的植物中分离出来。为了研究法国存在的4种STs之间的系统发育关系,利用PacBio和Illumina测序数据,分别组装了ST89和ST88菌株的完整环状基因组和单contig基因组。对这些新菌株的系统发育位置和可能的起源进行了系统发育分析。这篇数据文章有助于提高我们对苛养X.的多样性和起源的认识。在法国和欧洲的影城。
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来源期刊
Data in Brief
Data in Brief MULTIDISCIPLINARY SCIENCES-
CiteScore
3.10
自引率
0.00%
发文量
996
审稿时长
70 days
期刊介绍: Data in Brief provides a way for researchers to easily share and reuse each other''s datasets by publishing data articles that: -Thoroughly describe your data, facilitating reproducibility. -Make your data, which is often buried in supplementary material, easier to find. -Increase traffic towards associated research articles and data, leading to more citations. -Open up doors for new collaborations. Because you never know what data will be useful to someone else, Data in Brief welcomes submissions that describe data from all research areas.
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