Hoang Lin Nguyen, Quoc Tri Tran, Kim Tai Dang, Van Tan Tran
{"title":"Geometric and electronic structures of FeBn−/0/+ clusters (n = 1–3): insights from advanced computational methods","authors":"Hoang Lin Nguyen, Quoc Tri Tran, Kim Tai Dang, Van Tan Tran","doi":"10.1007/s00894-025-06428-2","DOIUrl":null,"url":null,"abstract":"<div><h3>Context</h3><p>Boron-doped iron clusters are extensively studied for their potential in materials science. Despite several quantum calculations with DFT and MRCI methods, a comprehensive understanding of the geometric and electronic structures of small FeB<sub><i>n</i></sub><sup>−/0/+</sup> clusters (<i>n</i> = 1–3) is still lacking. This work provides new insights into ground and low-lying excited states, detachment energies, and ionization energies of these clusters using DFT and multireference CASPT2, RASPT2, and DMRG-CASPT2 computational methods. Key findings reveal <sup>3</sup>Σ<sup>−</sup>, <sup>4</sup>Σ<sup>−</sup>, and <sup>3</sup>Σ<sup>−</sup> as ground states for FeB<sup>−/0/+</sup>, and cyclic-FeB<sub>2</sub><sup>−/0/+</sup> isomers (<sup>4</sup>B<sub>2</sub>, <sup>3</sup>B<sub>2</sub>, <sup>4</sup>B<sub>1</sub>) as the most stable for FeB<sub>2</sub><sup>−/0/+</sup> clusters. For FeB<sub>3</sub> clusters, anionic species have a tetrahedral geometry, while neutral and cationic species favor rhombic structures. Detachment energies of the anionic ground states increase progressively from FeB<sup>−</sup> to cyclic-FeB<sub>2</sub><sup>−</sup>, and further to the tetrahedral-FeB<sub>3</sub><sup>−</sup> isomer, which correlates with the number of boron atoms bonded to the iron atom. The vibrational progression in transitions within tetrahedral-FeB<sub>3</sub><sup>−/0</sup> is more prominent than in FeB<sup>−/0</sup> clusters and cyclic-FeB<sub>2</sub><sup>−/0</sup> isomers. The ionization energies of neutral ground states rise from FeB clusters to rhombic-FeB<sub>3</sub> and cyclic-FeB<sub>2</sub> isomers.</p><h3>Methods</h3><p>The geometry optimization and vibrational frequency calculations for the electronic states of FeB<sub>2</sub><sup>−/0/+</sup> and FeB<sub>3</sub><sup>−/0/+</sup> clusters were conducted using density functional theory (DFT) with the BP86 and MN15 functionals and the def2-QZVP basis set, implemented in ORCA 5.0. Franck–Condon factor simulations were performed using the ezSpectra suite, based on DFT-derived geometries and vibrational normal modes. Multireference RASPT2 and CASPT2 calculations utilized OpenMolcas, while DMRG-CASPT2 calculations employed ChemPS2 interfaced to OpenMolcas. The aug-cc-pwCVQZ-DK basis set was applied to iron, and aug-cc-pVQZ-DK to boron. The 1 s, 2 s, and 2p orbitals of iron and the 1 s orbital of boron were frozen in the second-order perturbation calculations. IPEA and imaginary shift parameters were set to 0.25 and 0.10, respectively. To achieve high accuracy, the DMRG-CASPT2 active spaces were expanded to 22 orbitals for FeB<sup>−/0/+</sup> and FeB<sub>2</sub><sup>−/0/+</sup>, and 23 orbitals for FeB<sub>3</sub><sup>−/0/+</sup>.</p></div>","PeriodicalId":651,"journal":{"name":"Journal of Molecular Modeling","volume":"31 7","pages":""},"PeriodicalIF":2.5000,"publicationDate":"2025-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Molecular Modeling","FirstCategoryId":"92","ListUrlMain":"https://link.springer.com/article/10.1007/s00894-025-06428-2","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Context
Boron-doped iron clusters are extensively studied for their potential in materials science. Despite several quantum calculations with DFT and MRCI methods, a comprehensive understanding of the geometric and electronic structures of small FeBn−/0/+ clusters (n = 1–3) is still lacking. This work provides new insights into ground and low-lying excited states, detachment energies, and ionization energies of these clusters using DFT and multireference CASPT2, RASPT2, and DMRG-CASPT2 computational methods. Key findings reveal 3Σ−, 4Σ−, and 3Σ− as ground states for FeB−/0/+, and cyclic-FeB2−/0/+ isomers (4B2, 3B2, 4B1) as the most stable for FeB2−/0/+ clusters. For FeB3 clusters, anionic species have a tetrahedral geometry, while neutral and cationic species favor rhombic structures. Detachment energies of the anionic ground states increase progressively from FeB− to cyclic-FeB2−, and further to the tetrahedral-FeB3− isomer, which correlates with the number of boron atoms bonded to the iron atom. The vibrational progression in transitions within tetrahedral-FeB3−/0 is more prominent than in FeB−/0 clusters and cyclic-FeB2−/0 isomers. The ionization energies of neutral ground states rise from FeB clusters to rhombic-FeB3 and cyclic-FeB2 isomers.
Methods
The geometry optimization and vibrational frequency calculations for the electronic states of FeB2−/0/+ and FeB3−/0/+ clusters were conducted using density functional theory (DFT) with the BP86 and MN15 functionals and the def2-QZVP basis set, implemented in ORCA 5.0. Franck–Condon factor simulations were performed using the ezSpectra suite, based on DFT-derived geometries and vibrational normal modes. Multireference RASPT2 and CASPT2 calculations utilized OpenMolcas, while DMRG-CASPT2 calculations employed ChemPS2 interfaced to OpenMolcas. The aug-cc-pwCVQZ-DK basis set was applied to iron, and aug-cc-pVQZ-DK to boron. The 1 s, 2 s, and 2p orbitals of iron and the 1 s orbital of boron were frozen in the second-order perturbation calculations. IPEA and imaginary shift parameters were set to 0.25 and 0.10, respectively. To achieve high accuracy, the DMRG-CASPT2 active spaces were expanded to 22 orbitals for FeB−/0/+ and FeB2−/0/+, and 23 orbitals for FeB3−/0/+.
期刊介绍:
The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling.
Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry.
Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.