Interaction of Phosphorylated C5aR1 With β-Arrestin1: A Comparative Structural Modeling Study.

IF 3.2 4区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Pulkit Kr Gupta, Aditi Singh, Soumendra Rana
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引用次数: 0

Abstract

The complement system is an essential element of the immune response, significantly contributing to the body's defense against pathogens by augmenting inflammation, opsonizing pathogens, and promoting cell lysis. The C5aR1 and C5aR2, which interact with the highly potent complement fragment C5a, are a crucial part of this system. C5aR1, a classical G protein-coupled receptor (GPCR), activates G-proteins upon binding C5a and triggers the proinflammatory signaling cascades. However, C5aR1, upon phosphorylation, also interacts with β-arrestins, which desensitize G-protein signaling and activate alternative signaling pathways, thereby influencing immune responses and triggering receptor internalization. Thus, structurally establishing the interaction between the binary complex of C5a-C5aR1 and β-arrestins is essential for effectively targeting C5aR1 signaling pathways. Notably, we have earlier elaborated the model ternary complex of unphosphorylated C5aR2 with β-arrestin1. In the absence of structural data related to the fully active ternary complex of C5a-C5aR1-β-arrestin1, the current study hypothesizes two plausible models ("front-end" and "back-end"), focusing on the cytosolic side interaction of the fully phosphorylated C-terminus peptide stretch of C5aR1 with the β-arrestin1, as the interaction of this section is not resolved in any reported ternary complexes of other GPCRs, including C5aR1. The two model complexes have been subjected to 1 μs of molecular dynamics (MD) simulations each and further compared energetically for their physical sustainability. The proposed ternary model complexes of C5a-C5aR1-β-arrestin1 fill the gulf and enhance the existing structural knowledge regarding the interactions of β-arrestins with C5aR1, which may open new avenues for targeting G-protein or β-arrestin-biased signaling.

磷酸化C5aR1与β-Arrestin1的相互作用:比较结构模型研究
补体系统是免疫反应的重要组成部分,通过增加炎症、调理病原体和促进细胞裂解,对人体防御病原体有重要作用。C5aR1和C5aR2与高效补体片段C5a相互作用,是该系统的重要组成部分。C5aR1是一种经典的G蛋白偶联受体(GPCR),通过与C5a结合激活G蛋白并触发促炎信号级联反应。然而,C5aR1在磷酸化后,也与β-阻滞蛋白相互作用,使g蛋白信号脱敏并激活替代信号通路,从而影响免疫反应并触发受体内化。因此,从结构上建立C5a-C5aR1二元复合物与β-阻滞蛋白之间的相互作用对于有效靶向C5aR1信号通路至关重要。值得注意的是,我们之前已经详细阐述了未磷酸化C5aR2与β-arrestin1的模型三元配合物。由于缺乏与C5a-C5aR1-β-arrestin1完全活性三元配合物相关的结构数据,目前的研究假设了两种合理的模型(“前端”和“后端”),重点关注C5aR1完全磷酸化的c端肽段与β-arrestin1的胞质侧相互作用,因为这部分的相互作用在任何其他gpcr的三元配合物中都没有解决,包括C5aR1。对两种模型配合物分别进行了1 μs的分子动力学(MD)模拟,并进一步对其物理可持续性进行了能量比较。提出的C5a-C5aR1-β-arrestin1三元模型复合物填补了这一空白,并增强了关于β-arrestins与C5aR1相互作用的现有结构知识,这可能为靶向g蛋白或β-arrestins偏态信号通路开辟新的途径。
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来源期刊
Proteins-Structure Function and Bioinformatics
Proteins-Structure Function and Bioinformatics 生物-生化与分子生物学
CiteScore
5.90
自引率
3.40%
发文量
172
审稿时长
3 months
期刊介绍: PROTEINS : Structure, Function, and Bioinformatics publishes original reports of significant experimental and analytic research in all areas of protein research: structure, function, computation, genetics, and design. The journal encourages reports that present new experimental or computational approaches for interpreting and understanding data from biophysical chemistry, structural studies of proteins and macromolecular assemblies, alterations of protein structure and function engineered through techniques of molecular biology and genetics, functional analyses under physiologic conditions, as well as the interactions of proteins with receptors, nucleic acids, or other specific ligands or substrates. Research in protein and peptide biochemistry directed toward synthesizing or characterizing molecules that simulate aspects of the activity of proteins, or that act as inhibitors of protein function, is also within the scope of PROTEINS. In addition to full-length reports, short communications (usually not more than 4 printed pages) and prediction reports are welcome. Reviews are typically by invitation; authors are encouraged to submit proposed topics for consideration.
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