{"title":"Interaction of Phosphorylated C5aR1 With β-Arrestin1: A Comparative Structural Modeling Study.","authors":"Pulkit Kr Gupta, Aditi Singh, Soumendra Rana","doi":"10.1002/prot.70007","DOIUrl":null,"url":null,"abstract":"<p><p>The complement system is an essential element of the immune response, significantly contributing to the body's defense against pathogens by augmenting inflammation, opsonizing pathogens, and promoting cell lysis. The C5aR1 and C5aR2, which interact with the highly potent complement fragment C5a, are a crucial part of this system. C5aR1, a classical G protein-coupled receptor (GPCR), activates G-proteins upon binding C5a and triggers the proinflammatory signaling cascades. However, C5aR1, upon phosphorylation, also interacts with β-arrestins, which desensitize G-protein signaling and activate alternative signaling pathways, thereby influencing immune responses and triggering receptor internalization. Thus, structurally establishing the interaction between the binary complex of C5a-C5aR1 and β-arrestins is essential for effectively targeting C5aR1 signaling pathways. Notably, we have earlier elaborated the model ternary complex of unphosphorylated C5aR2 with β-arrestin1. In the absence of structural data related to the fully active ternary complex of C5a-C5aR1-β-arrestin1, the current study hypothesizes two plausible models (\"front-end\" and \"back-end\"), focusing on the cytosolic side interaction of the fully phosphorylated C-terminus peptide stretch of C5aR1 with the β-arrestin1, as the interaction of this section is not resolved in any reported ternary complexes of other GPCRs, including C5aR1. The two model complexes have been subjected to 1 μs of molecular dynamics (MD) simulations each and further compared energetically for their physical sustainability. The proposed ternary model complexes of C5a-C5aR1-β-arrestin1 fill the gulf and enhance the existing structural knowledge regarding the interactions of β-arrestins with C5aR1, which may open new avenues for targeting G-protein or β-arrestin-biased signaling.</p>","PeriodicalId":56271,"journal":{"name":"Proteins-Structure Function and Bioinformatics","volume":" ","pages":""},"PeriodicalIF":3.2000,"publicationDate":"2025-06-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Proteins-Structure Function and Bioinformatics","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1002/prot.70007","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
The complement system is an essential element of the immune response, significantly contributing to the body's defense against pathogens by augmenting inflammation, opsonizing pathogens, and promoting cell lysis. The C5aR1 and C5aR2, which interact with the highly potent complement fragment C5a, are a crucial part of this system. C5aR1, a classical G protein-coupled receptor (GPCR), activates G-proteins upon binding C5a and triggers the proinflammatory signaling cascades. However, C5aR1, upon phosphorylation, also interacts with β-arrestins, which desensitize G-protein signaling and activate alternative signaling pathways, thereby influencing immune responses and triggering receptor internalization. Thus, structurally establishing the interaction between the binary complex of C5a-C5aR1 and β-arrestins is essential for effectively targeting C5aR1 signaling pathways. Notably, we have earlier elaborated the model ternary complex of unphosphorylated C5aR2 with β-arrestin1. In the absence of structural data related to the fully active ternary complex of C5a-C5aR1-β-arrestin1, the current study hypothesizes two plausible models ("front-end" and "back-end"), focusing on the cytosolic side interaction of the fully phosphorylated C-terminus peptide stretch of C5aR1 with the β-arrestin1, as the interaction of this section is not resolved in any reported ternary complexes of other GPCRs, including C5aR1. The two model complexes have been subjected to 1 μs of molecular dynamics (MD) simulations each and further compared energetically for their physical sustainability. The proposed ternary model complexes of C5a-C5aR1-β-arrestin1 fill the gulf and enhance the existing structural knowledge regarding the interactions of β-arrestins with C5aR1, which may open new avenues for targeting G-protein or β-arrestin-biased signaling.
期刊介绍:
PROTEINS : Structure, Function, and Bioinformatics publishes original reports of significant experimental and analytic research in all areas of protein research: structure, function, computation, genetics, and design. The journal encourages reports that present new experimental or computational approaches for interpreting and understanding data from biophysical chemistry, structural studies of proteins and macromolecular assemblies, alterations of protein structure and function engineered through techniques of molecular biology and genetics, functional analyses under physiologic conditions, as well as the interactions of proteins with receptors, nucleic acids, or other specific ligands or substrates. Research in protein and peptide biochemistry directed toward synthesizing or characterizing molecules that simulate aspects of the activity of proteins, or that act as inhibitors of protein function, is also within the scope of PROTEINS. In addition to full-length reports, short communications (usually not more than 4 printed pages) and prediction reports are welcome. Reviews are typically by invitation; authors are encouraged to submit proposed topics for consideration.