{"title":"Molecular dynamics simulation of crude oil detachment using ScCO2 and miscible agents on SiO2 surfaces","authors":"Congying Lu, Yue Zhao, Zhenyu Yuan, Xinyi Xu, Limin Li, Qinghe Gao, Wei Ding","doi":"10.1007/s00894-025-06421-9","DOIUrl":null,"url":null,"abstract":"<div><h3>Context</h3><p>Carbon capture, utilization, and storage technology has garnered increasing attention across various industries. To further elucidate the mechanism of CO<sub>2</sub> enhanced oil recovery, an amphiphilic surfactant was designed based on β-cyclodextrin. The mechanism of oil detachment from SiO<sub>2</sub> was investigated through molecular dynamics simulations. Density distribution curves and diffusion coefficients of oil phase and CO<sub>2</sub> indicated improved miscibility following the addition of surfactants. Subsequent analysis of desorption efficiency for oil phase revealed that the enhanced miscibility between CO<sub>2</sub> and oil molecules facilitated desorption from solid surfaces. The C2-OAC7 system exhibited superior desorption effects due to lower energy levels associated with CO<sub>2</sub> + surfactant and oil interactions. The addition of surfactants promoted mutual dissolution of CO<sub>2</sub> and oil primarily through increased cavity space in β-cyclodextrin, enhancing van der Waals forces between CO<sub>2</sub>-philic/oil-philic groups with CO<sub>2</sub> and octane respectively. This study provides valuable data references and theoretical foundations for structural design and action mechanisms of miscible surfactants.</p><h3>Method</h3><p>In this study, Packmol was employed to construct the model, Gromacs was utilized for molecular dynamics simulations, and VMD was adopted for graphical visualization. Initially, the energy minimization of the two systems, namely “CO<sub>2</sub> + Surfactant” and “Oil + SiO<sub>2</sub>-OH,” was performed. Subsequently, 1ns NPT simulations were conducted on both systems under specific conditions: 313 K and 105 bar for the “CO<sub>2</sub> + Surfactant” system, and 298 K and 101.325 kPa for the “Oil + SiO<sub>2</sub>-OH” system. Finally, a 10ns NPT simulation was carried out. The Berendsen and Parrinello-Rahman methods are used to maintain system pressure. The LINCS algorithm is employed to constrain molecular bond lengths, while the Lennard–Jones potential is applied to define the cutoff radius. Long-range electrostatic interactions are handled using the Particle-Mesh Ewald (PME) summation method.</p></div>","PeriodicalId":651,"journal":{"name":"Journal of Molecular Modeling","volume":"31 7","pages":""},"PeriodicalIF":2.5000,"publicationDate":"2025-06-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Molecular Modeling","FirstCategoryId":"92","ListUrlMain":"https://link.springer.com/article/10.1007/s00894-025-06421-9","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Context
Carbon capture, utilization, and storage technology has garnered increasing attention across various industries. To further elucidate the mechanism of CO2 enhanced oil recovery, an amphiphilic surfactant was designed based on β-cyclodextrin. The mechanism of oil detachment from SiO2 was investigated through molecular dynamics simulations. Density distribution curves and diffusion coefficients of oil phase and CO2 indicated improved miscibility following the addition of surfactants. Subsequent analysis of desorption efficiency for oil phase revealed that the enhanced miscibility between CO2 and oil molecules facilitated desorption from solid surfaces. The C2-OAC7 system exhibited superior desorption effects due to lower energy levels associated with CO2 + surfactant and oil interactions. The addition of surfactants promoted mutual dissolution of CO2 and oil primarily through increased cavity space in β-cyclodextrin, enhancing van der Waals forces between CO2-philic/oil-philic groups with CO2 and octane respectively. This study provides valuable data references and theoretical foundations for structural design and action mechanisms of miscible surfactants.
Method
In this study, Packmol was employed to construct the model, Gromacs was utilized for molecular dynamics simulations, and VMD was adopted for graphical visualization. Initially, the energy minimization of the two systems, namely “CO2 + Surfactant” and “Oil + SiO2-OH,” was performed. Subsequently, 1ns NPT simulations were conducted on both systems under specific conditions: 313 K and 105 bar for the “CO2 + Surfactant” system, and 298 K and 101.325 kPa for the “Oil + SiO2-OH” system. Finally, a 10ns NPT simulation was carried out. The Berendsen and Parrinello-Rahman methods are used to maintain system pressure. The LINCS algorithm is employed to constrain molecular bond lengths, while the Lennard–Jones potential is applied to define the cutoff radius. Long-range electrostatic interactions are handled using the Particle-Mesh Ewald (PME) summation method.
期刊介绍:
The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling.
Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry.
Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.