{"title":"Investigation of structural, electronic and toxicity profiles of pyrene, benzo[e]pyrene, and their ozonolysis products by using computational methods","authors":"Dhyani Vadgama, Harshil Shah, Satyam Shinde, Rohit Srivastava","doi":"10.1007/s00894-025-06418-4","DOIUrl":null,"url":null,"abstract":"<div><h3>Context</h3><p>Polycyclic aromatic hydrocarbons (PAHs) have a substantial impact on the decomposition process of the atmosphere and the hydrosphere and also pose health risks due to toxicity and long-range transport capabilities. Despite extensive experimental and field studies, the detailed molecular-level understanding of their chemical reactivity, transformation pathways and toxicity after ozonolysis remains limited. This study investigates the structural, electronic and toxicological changes occurring to PAH (pyrene and benzo[e]pyrene) upon ozonolysis using a quantum chemical approach. Ozonolysis products of pyrene and benzo[e]pyrene exhibit altered stability and reactivity, which suggests that they are unlikely to participate in subsequent atmospheric reactions. Importantly, the toxicity assessment of these compounds indicates that products are less toxic than parental compounds, except pyrene mono-ozonide and benzo[e]pyrene dialdehyde. By integrating these insights, environmental simulations can better predict the behaviour of PAHs in the atmosphere and their role in ozone decomposition, contributing to the development of a more accurate atmospheric model.</p><h3>Methods</h3><p>Gaussian 09 software is used to carry out Density Functional Theory calculations for investigating electronic and structural properties of PAHs and their ozonolysis products. The B3LYP, M06-2X, ωB97XD, PW6B95 and PBE0 functionals with basis sets 6–311++G(d,p), def2-TZVP and cc-pVTZ are employed to determine the suitable method. Among all, B3LYP/6–311++G(d,p) demonstrates better alignment with experimental data for pyrene. Therefore, B3LYP/6–311++G(d,p) level of theory is used to analyse the HOMO–LUMO, electrostatic potential and frequency of reactants and product molecules. The toxicity profile of these compounds is assessed using the ecological structure activity relationships (ECOSARV2.2) software, which estimates their environmental exposure risk.</p></div>","PeriodicalId":651,"journal":{"name":"Journal of Molecular Modeling","volume":"31 7","pages":""},"PeriodicalIF":2.5000,"publicationDate":"2025-06-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Molecular Modeling","FirstCategoryId":"92","ListUrlMain":"https://link.springer.com/article/10.1007/s00894-025-06418-4","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Context
Polycyclic aromatic hydrocarbons (PAHs) have a substantial impact on the decomposition process of the atmosphere and the hydrosphere and also pose health risks due to toxicity and long-range transport capabilities. Despite extensive experimental and field studies, the detailed molecular-level understanding of their chemical reactivity, transformation pathways and toxicity after ozonolysis remains limited. This study investigates the structural, electronic and toxicological changes occurring to PAH (pyrene and benzo[e]pyrene) upon ozonolysis using a quantum chemical approach. Ozonolysis products of pyrene and benzo[e]pyrene exhibit altered stability and reactivity, which suggests that they are unlikely to participate in subsequent atmospheric reactions. Importantly, the toxicity assessment of these compounds indicates that products are less toxic than parental compounds, except pyrene mono-ozonide and benzo[e]pyrene dialdehyde. By integrating these insights, environmental simulations can better predict the behaviour of PAHs in the atmosphere and their role in ozone decomposition, contributing to the development of a more accurate atmospheric model.
Methods
Gaussian 09 software is used to carry out Density Functional Theory calculations for investigating electronic and structural properties of PAHs and their ozonolysis products. The B3LYP, M06-2X, ωB97XD, PW6B95 and PBE0 functionals with basis sets 6–311++G(d,p), def2-TZVP and cc-pVTZ are employed to determine the suitable method. Among all, B3LYP/6–311++G(d,p) demonstrates better alignment with experimental data for pyrene. Therefore, B3LYP/6–311++G(d,p) level of theory is used to analyse the HOMO–LUMO, electrostatic potential and frequency of reactants and product molecules. The toxicity profile of these compounds is assessed using the ecological structure activity relationships (ECOSARV2.2) software, which estimates their environmental exposure risk.
期刊介绍:
The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling.
Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry.
Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.