Cryptic cycling by electroactive bacterioplankton in Trout Bog Lake.

IF 3.9 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
Charles N Olmsted, Mark Gahler, Eric Roden, Ben Peterson, James Lazarcik, Patricia Q Tran, Maureen Berg, Donald A Bryant, Danielle Goudeau, Rex R Malmstrom, Mohan Qin, Katherine D McMahon
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引用次数: 0

Abstract

The potential for extracellular electron transfer (EET) is a prevailing genomic feature of humic lake bacterioplankton. However, there has been little evidence for the substantial ecological contribution predicted by genetics. We hypothesized that anoxygenic phototrophic electrotrophs and accompanying heterotrophic electrogens cycle dissolved organic matter (DOM) between oxidized and reduced states. We predicted that such bacterioplankton would exhibit diel-scale oscillations due to the light dependency of photosynthesis. Using Trout Bog Lake in Wisconsin, USA, as our model ecosystem, we profiled the water column with depth-discrete metagenomic, physiochemical, and electrochemical analyses. We observed variation in oxidation reduction potential (ORP) in response to sunlight, initiating at depths populated by anoxygenic phototrophs with EET genes. We developed an automated buoy to measure electric current flow between many pairs of electrodes simultaneously, observing correlation in electron consumption to sunlight. Our results, combined with published metatranscriptomic analysis, indicate the occurrence of electron cycling between phototrophic oxidation (electrotrophic metabolism) by Chlorobium and anaerobic respiration (electrogenic metabolism) by Geothrix, involving DOM. We also repeatedly observed gradual seasonal increases in hypolimnion ORP throughout summer. These diel and seasonal patterns imply that electroactive DOM mediates the ecology of electroactive bacteria in lakes, controlling humic lake methane emissions.IMPORTANCEWe investigated the physical, chemical, and redox characteristics of a bog lake and electrodes hung therein to test the hypothesis that dissolved organic matter is being cycled between oxidized and reduced states by electroactive bacterioplankton powered by phototrophy. To do so, we performed field-based analyses on multiple timescales using both established and novel instrumentation. We paired these analyses with recently developed bioinformatics pipelines for metagenomics data to investigate genes that enable electroactive metabolism and accompanying metabolisms. Our results are consistent with our hypothesis and yet upend some of our other expectations. Our findings have implications for understanding greenhouse gas emissions from lakes, including electroactivity as an integral part of lake metabolism throughout more of the anoxic parts of lakes and for a longer portion of the summer than expected. Our results also give a sense of what electroactivity occurs at given depths and provide a strong basis for future studies.

鳟鱼沼泽湖浮游电活性细菌的隐循环。
细胞外电子转移(EET)的潜力是腐殖质湖浮游细菌的主要基因组特征。然而,很少有证据表明遗传学预测的实质性生态贡献。我们假设无氧光养电养生物和伴随的异养电循环在氧化和还原状态之间溶解有机物(DOM)。我们预测,由于光合作用的光依赖性,这种浮游细菌将表现出dieel尺度的振荡。以美国威斯康星州的鳟鱼沼泽湖为模型生态系统,采用深度离散元基因组、物理化学和电化学分析对水柱进行了分析。我们观察到氧化还原电位(ORP)在阳光下的变化,在具有EET基因的无氧光养生物聚集的深度开始。我们开发了一种自动浮标,可以同时测量许多对电极之间的电流,观察电子消耗与阳光的关系。我们的研究结果,结合已发表的亚转录组学分析,表明在氯虫的光营养氧化(电营养代谢)和地思虫的厌氧呼吸(电生成代谢)之间发生电子循环,涉及DOM。我们还反复观察到整个夏季低磷ORP的逐渐季节性增加。这些特征表明,电活性DOM调节了湖泊中电活性细菌的生态,控制了腐殖质湖泊的甲烷排放。我们研究了一个沼泽湖泊的物理、化学和氧化还原特性,并在其中悬挂了电极,以检验溶解的有机物在由光养驱动的电活性浮游细菌的氧化和还原状态之间循环的假设。为此,我们使用现有的和新的仪器在多个时间尺度上进行了基于现场的分析。我们将这些分析与最近开发的生物信息学管道相结合,用于宏基因组学数据,以研究导致电活性代谢和伴随代谢的基因。我们的结果与我们的假设一致,但也颠覆了我们的一些其他期望。我们的发现对理解湖泊的温室气体排放有一定的意义,包括电活动作为湖泊代谢的一个组成部分,在湖泊的缺氧部分和夏季比预期的更长。我们的结果也给出了在给定深度电活动发生的感觉,并为未来的研究提供了坚实的基础。
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来源期刊
Applied and Environmental Microbiology
Applied and Environmental Microbiology 生物-生物工程与应用微生物
CiteScore
7.70
自引率
2.30%
发文量
730
审稿时长
1.9 months
期刊介绍: Applied and Environmental Microbiology (AEM) publishes papers that make significant contributions to (a) applied microbiology, including biotechnology, protein engineering, bioremediation, and food microbiology, (b) microbial ecology, including environmental, organismic, and genomic microbiology, and (c) interdisciplinary microbiology, including invertebrate microbiology, plant microbiology, aquatic microbiology, and geomicrobiology.
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