DNA damage repair (DDR) related prognostic risk model in multiple myeloma based on single-cell and bulk sequencing

IF 3 3区 生物学 Q2 GENETICS & HEREDITY
Hongxiu Liu , Zhihua Li , Yihua Wang , Can Li , Kaiqing Yan , Yanping Ma
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引用次数: 0

Abstract

Genomic rearrangements and instability are key pathological features of multiple myeloma (MM). However, the origins of DNA damage in MM and its impact on disease progression remain incompletely understood. Here, we screened DNA damage repair (DDR) genes from single-cell RNA sequencing and bulkRNA-seq datasets using WGCNA and differential expression analysis. A prognostic model was constructed, demonstrating that patients in high DDR expression group had poor outcomes in both the training and validation cohorts. The nomogram also indicated that DDR-related risk scores had good predictive performance. Then, the differences of immune infiltration and mutation landscape between low and high DDR group were investigated. PARP1, PCNA, and RAD23A were identified as key DDR-related genes in MM. Additionally, we explored the drug sensitivity and potential molecular mechanisms associated with each key gene. Altogether, the DDR-related prognostic risk model in MM may facilitate risk stratification and guide treatment decisions, with key prognostic genes might potentially serving as biomarkers and therapeutic targets.
基于单细胞和批量测序的多发性骨髓瘤DNA损伤修复(DDR)相关预后风险模型
基因组重排和不稳定性是多发性骨髓瘤(MM)的主要病理特征。然而,MM中DNA损伤的起源及其对疾病进展的影响仍不完全清楚。在这里,我们使用WGCNA和差异表达分析从单细胞RNA测序和bulkRNA-seq数据集中筛选DNA损伤修复(DDR)基因。构建预后模型,结果显示DDR高表达组患者在训练组和验证组的预后均较差。nomogram也表明ddr相关风险评分具有良好的预测性能。然后观察低、高DDR组免疫浸润和突变景观的差异。PARP1、PCNA和RAD23A是MM中与ddr相关的关键基因。此外,我们探索了每个关键基因的药物敏感性和潜在的分子机制。总之,MM中与ddr相关的预后风险模型可以促进风险分层并指导治疗决策,关键预后基因可能潜在地作为生物标志物和治疗靶点。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
DNA Repair
DNA Repair 生物-毒理学
CiteScore
7.60
自引率
5.30%
发文量
91
审稿时长
59 days
期刊介绍: DNA Repair provides a forum for the comprehensive coverage of DNA repair and cellular responses to DNA damage. The journal publishes original observations on genetic, cellular, biochemical, structural and molecular aspects of DNA repair, mutagenesis, cell cycle regulation, apoptosis and other biological responses in cells exposed to genomic insult, as well as their relationship to human disease. DNA Repair publishes full-length research articles, brief reports on research, and reviews. The journal welcomes articles describing databases, methods and new technologies supporting research on DNA repair and responses to DNA damage. Letters to the Editor, hot topics and classics in DNA repair, historical reflections, book reviews and meeting reports also will be considered for publication.
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