π-Turns in Peptides: A Crystal-State Literature Survey

IF 1.8 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Barbara Biondi, Fernando Formaggio, Claudio Toniolo, Cristina Peggion, Marco Crisma
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Abstract

The results of an analysis on the presence of π-turns, characterized by an i ← i + 5 C=O···H–N intramolecular hydrogen bond, in the X-ray diffraction structures of peptides are discussed. The survey returned a total of 55 π-turn occurrences in linear and cyclic peptides. π-Turns characterized by a helical conformation for residue i + 4, but with a screw sense opposite to that of the three preceding residues, are largely prevailing. They are often found at the C-end of incipient or fully developed α-helices, 310-helices, and mixed α-/310-helices, thus acting as a C-capping motif. However, the structures of two linear peptides and 15 cyclopeptides indicate that these types of π-turns can exist in isolation, without the support of a preceding helix. The frequent presence of additional intramolecular hydrogen bonds internal to the π-turn is also investigated. Cyclopeptides offered examples of two types of π-turns that have no parallel in the structures of proteins. Differently from proteins, π-turns characterized by helical ϕ, ψ sets of the same screw sense for all internal residues are hitherto unreported in the X-ray diffraction structures of peptides. A suggestion for the rational design in peptides/peptidomimetics of a π-turn featuring the screw-sense reversal of residue i + 4 is proposed.

Abstract Image

多肽中的π-旋:晶体文献综述
本文讨论了在多肽的x射线衍射结构中存在以i←i + 5 C=O···H-N分子内氢键为特征的π匝的分析结果。调查结果显示,在线性和环状多肽中共出现55个π转。残基i + 4的π旋具有螺旋构象,但与前三个残基相反,π旋具有螺旋意义。它们通常位于α-螺旋、310-螺旋和混合α-/310-螺旋的c端,是C-capping基序。然而,两个线性肽和15个环肽的结构表明,这些类型的π-匝可以独立存在,没有前面螺旋的支持。此外,还研究了π匝内频繁出现的分子内附加氢键。环肽提供了两种在蛋白质结构中没有相似之处的π旋的例子。与蛋白质不同的是,所有内部残基具有相同螺旋意义的螺旋形φ和ψ集的π匝数在肽的x射线衍射结构中迄今尚未报道。提出了合理设计残基i + 4螺旋反转π旋的多肽/拟肽衍生物的建议。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of Peptide Science
Journal of Peptide Science 生物-分析化学
CiteScore
3.40
自引率
4.80%
发文量
83
审稿时长
1.7 months
期刊介绍: The official Journal of the European Peptide Society EPS The Journal of Peptide Science is a cooperative venture of John Wiley & Sons, Ltd and the European Peptide Society, undertaken for the advancement of international peptide science by the publication of original research results and reviews. The Journal of Peptide Science publishes three types of articles: Research Articles, Rapid Communications and Reviews. The scope of the Journal embraces the whole range of peptide chemistry and biology: the isolation, characterisation, synthesis properties (chemical, physical, conformational, pharmacological, endocrine and immunological) and applications of natural peptides; studies of their analogues, including peptidomimetics; peptide antibiotics and other peptide-derived complex natural products; peptide and peptide-related drug design and development; peptide materials and nanomaterials science; combinatorial peptide research; the chemical synthesis of proteins; and methodological advances in all these areas. The spectrum of interests is well illustrated by the published proceedings of the regular international Symposia of the European, American, Japanese, Australian, Chinese and Indian Peptide Societies.
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