Evolution of GC-biased gene conversion by natural selection.

IF 3.3 3区 生物学 Q2 GENETICS & HEREDITY
Genetics Pub Date : 2025-06-13 DOI:10.1093/genetics/iyaf111
Augustin Clessin, Julien Joseph, Nicolas Lartillot
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引用次数: 0

Abstract

GC-biased gene conversion (gBGC) is a recombination-associated evolutionary process that biases the segregation ratio of AT:GC polymorphisms in the gametes of heterozygotes, in favour of GC alleles. This process is the major determinant of the variation in base composition across the human genome and can be the cause of a substantial burden of deleterious GC alleles. While the importance of GC-biased gene conversion in molecular evolution is increasingly recognised, the reasons for its existence and its variation in intensity between species remain largely unknown. Using simulations and semi-analytical approximations, we investigated the evolution of gBGC as a quantitative trait evolving by mutation, drift and natural selection. We show that in a finite population in which most mutations are deleterious, gBGC is under weak stabilising selection around a positive value that mainly depends on the intensity of the mutational bias and on the selective constraints exerted on the genome. Importantly, the levels of gBGC that evolve by natural selection do not minimize the load in the population and even increase it substantially in regions of high recombination rate. Therefore, even if they reduce the fitness of the population, the levels of gBGC currently observed in humans may in fact have been (weakly) positively selected.

自然选择中gc偏向基因转化的进化。
GC偏倚基因转化(GC-biased gene conversion, gBGC)是一种重组相关的进化过程,它使杂合子配子中AT:GC多态性的分离比例偏向GC等位基因。这一过程是整个人类基因组碱基组成变异的主要决定因素,可能是有害GC等位基因大量增加的原因。虽然gc偏向基因转换在分子进化中的重要性日益被认识到,但其存在的原因及其在物种之间的强度差异在很大程度上仍然未知。利用模拟和半解析近似方法,研究了gBGC作为一种数量性状在突变、漂变和自然选择过程中的进化。我们表明,在一个有限的种群中,大多数突变是有害的,gBGC在一个正值周围处于弱稳定选择下,这主要取决于突变偏差的强度和施加在基因组上的选择约束。重要的是,通过自然选择进化的gBGC水平不会使种群中的负荷最小化,甚至在高重组率的区域会大大增加负荷。因此,即使它们降低了种群的适应性,目前在人类中观察到的gBGC水平实际上可能是(弱)正选择的。
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来源期刊
Genetics
Genetics GENETICS & HEREDITY-
CiteScore
6.90
自引率
6.10%
发文量
177
审稿时长
1.5 months
期刊介绍: GENETICS is published by the Genetics Society of America, a scholarly society that seeks to deepen our understanding of the living world by advancing our understanding of genetics. Since 1916, GENETICS has published high-quality, original research presenting novel findings bearing on genetics and genomics. The journal publishes empirical studies of organisms ranging from microbes to humans, as well as theoretical work. While it has an illustrious history, GENETICS has changed along with the communities it serves: it is not your mentor''s journal. The editors make decisions quickly – in around 30 days – without sacrificing the excellence and scholarship for which the journal has long been known. GENETICS is a peer reviewed, peer-edited journal, with an international reach and increasing visibility and impact. All editorial decisions are made through collaboration of at least two editors who are practicing scientists. GENETICS is constantly innovating: expanded types of content include Reviews, Commentary (current issues of interest to geneticists), Perspectives (historical), Primers (to introduce primary literature into the classroom), Toolbox Reviews, plus YeastBook, FlyBook, and WormBook (coming spring 2016). For particularly time-sensitive results, we publish Communications. As part of our mission to serve our communities, we''ve published thematic collections, including Genomic Selection, Multiparental Populations, Mouse Collaborative Cross, and the Genetics of Sex.
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