{"title":"TPA-Seg: Multi-Class Nucleus Segmentation Using Text Prompts and Cross-Attention","authors":"Yao-Ming Liang, Shi-Yu Lin, Zu-Xuan Wang, Ling-Feng Yang, Yi-Bo Jin, Yan-Hong Ji","doi":"10.1002/ima.70125","DOIUrl":null,"url":null,"abstract":"<div>\n \n <p>Precise semantic segmentation of nuclei in pathological images is a crucial step in pathological diagnosis and analysis. Given the limited scale and the high cost of annotation for current pathological datasets, appropriately incorporating textual prompts as prior knowledge is key to achieving high-accuracy multi-class segmentation. These text prompts can be derived from image information such as the morphology, size, location, and density of nuclei in medical images. The text prompts are processed by a text encoder to obtain textual features, while the images are processed by an image encoder to obtain multi-scale feature maps. These features are then fused through feature fusion blocks, allowing the features to interact and be perceived in a multi-scale multimodal manner. Finally, metric learning and weighted loss functions are introduced to prevent feature loss caused by a small number of categories or small target sizes in the image. Experimental results on multiple pathological image datasets demonstrate that our method is effective and outperforms existing models in the segmentation of pathological images. Furthermore, the study verifies the effectiveness of each module and evaluates the potential of different types of text prompts in improving performance. The insights and methods proposed may offer a novel solution for segmentation and classification tasks. The code can be viewed at https://github.com/kahhh743/TPA-Seg.</p>\n </div>","PeriodicalId":14027,"journal":{"name":"International Journal of Imaging Systems and Technology","volume":"35 4","pages":""},"PeriodicalIF":2.5000,"publicationDate":"2025-06-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"International Journal of Imaging Systems and Technology","FirstCategoryId":"94","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/ima.70125","RegionNum":4,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"ENGINEERING, ELECTRICAL & ELECTRONIC","Score":null,"Total":0}
引用次数: 0
Abstract
Precise semantic segmentation of nuclei in pathological images is a crucial step in pathological diagnosis and analysis. Given the limited scale and the high cost of annotation for current pathological datasets, appropriately incorporating textual prompts as prior knowledge is key to achieving high-accuracy multi-class segmentation. These text prompts can be derived from image information such as the morphology, size, location, and density of nuclei in medical images. The text prompts are processed by a text encoder to obtain textual features, while the images are processed by an image encoder to obtain multi-scale feature maps. These features are then fused through feature fusion blocks, allowing the features to interact and be perceived in a multi-scale multimodal manner. Finally, metric learning and weighted loss functions are introduced to prevent feature loss caused by a small number of categories or small target sizes in the image. Experimental results on multiple pathological image datasets demonstrate that our method is effective and outperforms existing models in the segmentation of pathological images. Furthermore, the study verifies the effectiveness of each module and evaluates the potential of different types of text prompts in improving performance. The insights and methods proposed may offer a novel solution for segmentation and classification tasks. The code can be viewed at https://github.com/kahhh743/TPA-Seg.
期刊介绍:
The International Journal of Imaging Systems and Technology (IMA) is a forum for the exchange of ideas and results relevant to imaging systems, including imaging physics and informatics. The journal covers all imaging modalities in humans and animals.
IMA accepts technically sound and scientifically rigorous research in the interdisciplinary field of imaging, including relevant algorithmic research and hardware and software development, and their applications relevant to medical research. The journal provides a platform to publish original research in structural and functional imaging.
The journal is also open to imaging studies of the human body and on animals that describe novel diagnostic imaging and analyses methods. Technical, theoretical, and clinical research in both normal and clinical populations is encouraged. Submissions describing methods, software, databases, replication studies as well as negative results are also considered.
The scope of the journal includes, but is not limited to, the following in the context of biomedical research:
Imaging and neuro-imaging modalities: structural MRI, functional MRI, PET, SPECT, CT, ultrasound, EEG, MEG, NIRS etc.;
Neuromodulation and brain stimulation techniques such as TMS and tDCS;
Software and hardware for imaging, especially related to human and animal health;
Image segmentation in normal and clinical populations;
Pattern analysis and classification using machine learning techniques;
Computational modeling and analysis;
Brain connectivity and connectomics;
Systems-level characterization of brain function;
Neural networks and neurorobotics;
Computer vision, based on human/animal physiology;
Brain-computer interface (BCI) technology;
Big data, databasing and data mining.