TPA-Seg: Multi-Class Nucleus Segmentation Using Text Prompts and Cross-Attention

IF 2.5 4区 计算机科学 Q2 ENGINEERING, ELECTRICAL & ELECTRONIC
Yao-Ming Liang, Shi-Yu Lin, Zu-Xuan Wang, Ling-Feng Yang, Yi-Bo Jin, Yan-Hong Ji
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引用次数: 0

Abstract

Precise semantic segmentation of nuclei in pathological images is a crucial step in pathological diagnosis and analysis. Given the limited scale and the high cost of annotation for current pathological datasets, appropriately incorporating textual prompts as prior knowledge is key to achieving high-accuracy multi-class segmentation. These text prompts can be derived from image information such as the morphology, size, location, and density of nuclei in medical images. The text prompts are processed by a text encoder to obtain textual features, while the images are processed by an image encoder to obtain multi-scale feature maps. These features are then fused through feature fusion blocks, allowing the features to interact and be perceived in a multi-scale multimodal manner. Finally, metric learning and weighted loss functions are introduced to prevent feature loss caused by a small number of categories or small target sizes in the image. Experimental results on multiple pathological image datasets demonstrate that our method is effective and outperforms existing models in the segmentation of pathological images. Furthermore, the study verifies the effectiveness of each module and evaluates the potential of different types of text prompts in improving performance. The insights and methods proposed may offer a novel solution for segmentation and classification tasks. The code can be viewed at https://github.com/kahhh743/TPA-Seg.

TPA-Seg:使用文本提示和交叉注意的多类核分割
病理图像中细胞核的精确语义分割是病理诊断和分析的关键步骤。鉴于当前病理数据集标注的规模有限和成本高,适当地将文本提示作为先验知识是实现高精度多类分割的关键。这些文本提示可以来自图像信息,如医学图像中的核的形态、大小、位置和密度。文本提示由文本编码器处理以获得文本特征,图像由图像编码器处理以获得多尺度特征图。然后通过特征融合块融合这些特征,允许特征以多尺度多模态方式交互和感知。最后,引入度量学习和加权损失函数,防止图像中类别数量少或目标尺寸小导致的特征损失。在多个病理图像数据集上的实验结果表明,我们的方法是有效的,并且在病理图像分割方面优于现有的模型。此外,本研究验证了每个模块的有效性,并评估了不同类型的文本提示在提高性能方面的潜力。提出的见解和方法可能为分割和分类任务提供一种新的解决方案。代码可以在https://github.com/kahhh743/TPA-Seg上查看。
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来源期刊
International Journal of Imaging Systems and Technology
International Journal of Imaging Systems and Technology 工程技术-成像科学与照相技术
CiteScore
6.90
自引率
6.10%
发文量
138
审稿时长
3 months
期刊介绍: The International Journal of Imaging Systems and Technology (IMA) is a forum for the exchange of ideas and results relevant to imaging systems, including imaging physics and informatics. The journal covers all imaging modalities in humans and animals. IMA accepts technically sound and scientifically rigorous research in the interdisciplinary field of imaging, including relevant algorithmic research and hardware and software development, and their applications relevant to medical research. The journal provides a platform to publish original research in structural and functional imaging. The journal is also open to imaging studies of the human body and on animals that describe novel diagnostic imaging and analyses methods. Technical, theoretical, and clinical research in both normal and clinical populations is encouraged. Submissions describing methods, software, databases, replication studies as well as negative results are also considered. The scope of the journal includes, but is not limited to, the following in the context of biomedical research: Imaging and neuro-imaging modalities: structural MRI, functional MRI, PET, SPECT, CT, ultrasound, EEG, MEG, NIRS etc.; Neuromodulation and brain stimulation techniques such as TMS and tDCS; Software and hardware for imaging, especially related to human and animal health; Image segmentation in normal and clinical populations; Pattern analysis and classification using machine learning techniques; Computational modeling and analysis; Brain connectivity and connectomics; Systems-level characterization of brain function; Neural networks and neurorobotics; Computer vision, based on human/animal physiology; Brain-computer interface (BCI) technology; Big data, databasing and data mining.
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