{"title":"Mechanism and kinetics of the reaction of atomic hydrogen with allene.","authors":"Tien V Pham","doi":"10.1007/s00894-025-06406-8","DOIUrl":null,"url":null,"abstract":"<p><strong>Context: </strong>In the present work, mechanism and kinetics of the H + allene reaction have been carefully conducted. The computed results reveal that the abstraction mechanism can lead to the formation of propargyl radical (C<sub>3</sub>H<sub>3</sub>), an important precursor for the formation of aromatic hydrocarbons, with the energy barrier of about 10.3 kcal/mol. In contrast, the addition mechanism can easily overcome the energy barriers of only 2.1 and 3.8 kcal/mol to form two adducts IS1 (CH<sub>3</sub>CCH<sub>2</sub>, 2-propenyl) and IS2 (CH<sub>2</sub>CHCH<sub>2</sub>, allyl), respectively. These two adducts can then decomepose to various bimolecular products such as (C<sub>2</sub>H<sub>2</sub> + CH<sub>3</sub>) and (H + propyne). Kinetic analysis shows IS1 dominates product formation at T ≤ 600 K (yield 41-70%), while the (H + propyne) channel becomes predominant above 900 K (branching ratio 50-70%). The calculated rate constants for the abstraction channel are consistent with literature values, and the overall rate constants agree well with experimental data from Whytock, Brown, Michael, and Bentz. These results highlight the reliability of the computational approach and provide essential parameters for modeling C₃H₅-related systems.</p><p><strong>Methods: </strong>All species involved in the H + allene reaction were optimized using the DFT/M06-2X method with the aug-cc-pVTZ basis set. Single-point energies were calculated at the CCSD(T) level and extrapolated to the complete basis set (CBS) limit using aug-cc-pVTZ, aug-cc-pVQZ, and aug-cc-pV5Z. Rate constants were computed using transition state theory (TST) with the ChemRate program for the abstraction pathway, and RRKM/master equation calculations with the MESMER software for the addition-dissociation network. All quantum chemical calculations were performed using the Gaussian software package.</p>","PeriodicalId":651,"journal":{"name":"Journal of Molecular Modeling","volume":"31 7","pages":"185"},"PeriodicalIF":2.1000,"publicationDate":"2025-06-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Molecular Modeling","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1007/s00894-025-06406-8","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Context: In the present work, mechanism and kinetics of the H + allene reaction have been carefully conducted. The computed results reveal that the abstraction mechanism can lead to the formation of propargyl radical (C3H3), an important precursor for the formation of aromatic hydrocarbons, with the energy barrier of about 10.3 kcal/mol. In contrast, the addition mechanism can easily overcome the energy barriers of only 2.1 and 3.8 kcal/mol to form two adducts IS1 (CH3CCH2, 2-propenyl) and IS2 (CH2CHCH2, allyl), respectively. These two adducts can then decomepose to various bimolecular products such as (C2H2 + CH3) and (H + propyne). Kinetic analysis shows IS1 dominates product formation at T ≤ 600 K (yield 41-70%), while the (H + propyne) channel becomes predominant above 900 K (branching ratio 50-70%). The calculated rate constants for the abstraction channel are consistent with literature values, and the overall rate constants agree well with experimental data from Whytock, Brown, Michael, and Bentz. These results highlight the reliability of the computational approach and provide essential parameters for modeling C₃H₅-related systems.
Methods: All species involved in the H + allene reaction were optimized using the DFT/M06-2X method with the aug-cc-pVTZ basis set. Single-point energies were calculated at the CCSD(T) level and extrapolated to the complete basis set (CBS) limit using aug-cc-pVTZ, aug-cc-pVQZ, and aug-cc-pV5Z. Rate constants were computed using transition state theory (TST) with the ChemRate program for the abstraction pathway, and RRKM/master equation calculations with the MESMER software for the addition-dissociation network. All quantum chemical calculations were performed using the Gaussian software package.
期刊介绍:
The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling.
Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry.
Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.