{"title":"Evaluation of antioxidant properties of lycopene isomers using density functional theory.","authors":"Baggya Sharmali Wickramanayaka Karunarathna, Thashini Kavindiyani Gunawardhana, G M Supun Tharaka Gajasinghe, Ranga Srinath Jayakody, Jayamal Damsith Wanniarachchi, Krishna Kuben Govender","doi":"10.1007/s00894-025-06399-4","DOIUrl":null,"url":null,"abstract":"<p><strong>Context: </strong>Lycopene, a naturally occurring carotenoid found in all-trans configuration in various fruits and vegetables, is recognized for its potential antioxidant properties. This study employed the Density Functional Theory (DFT) to investigate and compare lycopene isomers' antioxidant properties through the radical scavenging mechanism. The antioxidant capacity of the isomers is quantified using global descriptive parameters, ranking their potential from highest to lowest as 5-cis > all-trans > 9-cis > 13-cis. The study identifies the Hydrogen Atom Transfer (HAT) mechanism as the predominant mode of antioxidant action, evidenced by the lowest bond dissociation energies when compared to other mechanisms such as Sequential Electron Transfer Proton Transfer (SETPT) and Sequential Proton Loss Electron Transfer (SPLET). The 5-cis isomer exhibits the lowest bond dissociation energy, indicating a superior thermodynamic potential for antioxidant activity relative to the other isomers. Additionally, activation energy assessments reveal that the 5-cis and 13-cis isomers are the most kinetically favourable under the HAT radical scavenging mechanism, surpassing the 9-cis and all-trans configurations. This investigation highlights the 5-cis isomer as both thermodynamically and kinetically the most favourable antioxidant among the lycopene isomers studied.</p><p><strong>Methods: </strong>The antioxidant potential and radical scavenging mechanism were computed using the ωB97X-D/6-31 + G (d,p) level of theory and the Gaussian 16 software package. The frontier molecular analysis and the global descriptive parameters were performed to compare the antioxidant properties of all-trans, 5-cis, 9-cis, and 13-cis isomers. Hydrogen atom abstraction (HAA), sequential electron transfer proton transfer (SETPT), and sequential proton loss electron transfer (SPLET) mechanisms were studied. The radical scavenging mechanism of isomers was performed using the QST3 (synchronization transition Quasi-Newton Searching) calculation, followed by the IRC (Intrinsic Reaction Coordinate) calculation.</p>","PeriodicalId":651,"journal":{"name":"Journal of Molecular Modeling","volume":"31 7","pages":"184"},"PeriodicalIF":2.1000,"publicationDate":"2025-06-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Molecular Modeling","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1007/s00894-025-06399-4","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Context: Lycopene, a naturally occurring carotenoid found in all-trans configuration in various fruits and vegetables, is recognized for its potential antioxidant properties. This study employed the Density Functional Theory (DFT) to investigate and compare lycopene isomers' antioxidant properties through the radical scavenging mechanism. The antioxidant capacity of the isomers is quantified using global descriptive parameters, ranking their potential from highest to lowest as 5-cis > all-trans > 9-cis > 13-cis. The study identifies the Hydrogen Atom Transfer (HAT) mechanism as the predominant mode of antioxidant action, evidenced by the lowest bond dissociation energies when compared to other mechanisms such as Sequential Electron Transfer Proton Transfer (SETPT) and Sequential Proton Loss Electron Transfer (SPLET). The 5-cis isomer exhibits the lowest bond dissociation energy, indicating a superior thermodynamic potential for antioxidant activity relative to the other isomers. Additionally, activation energy assessments reveal that the 5-cis and 13-cis isomers are the most kinetically favourable under the HAT radical scavenging mechanism, surpassing the 9-cis and all-trans configurations. This investigation highlights the 5-cis isomer as both thermodynamically and kinetically the most favourable antioxidant among the lycopene isomers studied.
Methods: The antioxidant potential and radical scavenging mechanism were computed using the ωB97X-D/6-31 + G (d,p) level of theory and the Gaussian 16 software package. The frontier molecular analysis and the global descriptive parameters were performed to compare the antioxidant properties of all-trans, 5-cis, 9-cis, and 13-cis isomers. Hydrogen atom abstraction (HAA), sequential electron transfer proton transfer (SETPT), and sequential proton loss electron transfer (SPLET) mechanisms were studied. The radical scavenging mechanism of isomers was performed using the QST3 (synchronization transition Quasi-Newton Searching) calculation, followed by the IRC (Intrinsic Reaction Coordinate) calculation.
期刊介绍:
The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling.
Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry.
Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.