Evaluation of antioxidant properties of lycopene isomers using density functional theory.

IF 2.1 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Baggya Sharmali Wickramanayaka Karunarathna, Thashini Kavindiyani Gunawardhana, G M Supun Tharaka Gajasinghe, Ranga Srinath Jayakody, Jayamal Damsith Wanniarachchi, Krishna Kuben Govender
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Abstract

Context: Lycopene, a naturally occurring carotenoid found in all-trans configuration in various fruits and vegetables, is recognized for its potential antioxidant properties. This study employed the Density Functional Theory (DFT) to investigate and compare lycopene isomers' antioxidant properties through the radical scavenging mechanism. The antioxidant capacity of the isomers is quantified using global descriptive parameters, ranking their potential from highest to lowest as 5-cis > all-trans > 9-cis > 13-cis. The study identifies the Hydrogen Atom Transfer (HAT) mechanism as the predominant mode of antioxidant action, evidenced by the lowest bond dissociation energies when compared to other mechanisms such as Sequential Electron Transfer Proton Transfer (SETPT) and Sequential Proton Loss Electron Transfer (SPLET). The 5-cis isomer exhibits the lowest bond dissociation energy, indicating a superior thermodynamic potential for antioxidant activity relative to the other isomers. Additionally, activation energy assessments reveal that the 5-cis and 13-cis isomers are the most kinetically favourable under the HAT radical scavenging mechanism, surpassing the 9-cis and all-trans configurations. This investigation highlights the 5-cis isomer as both thermodynamically and kinetically the most favourable antioxidant among the lycopene isomers studied.

Methods: The antioxidant potential and radical scavenging mechanism were computed using the ωB97X-D/6-31 + G (d,p) level of theory and the Gaussian 16 software package. The frontier molecular analysis and the global descriptive parameters were performed to compare the antioxidant properties of all-trans, 5-cis, 9-cis, and 13-cis isomers. Hydrogen atom abstraction (HAA), sequential electron transfer proton transfer (SETPT), and sequential proton loss electron transfer (SPLET) mechanisms were studied. The radical scavenging mechanism of isomers was performed using the QST3 (synchronization transition Quasi-Newton Searching) calculation, followed by the IRC (Intrinsic Reaction Coordinate) calculation.

用密度泛函理论评价番茄红素异构体的抗氧化性能。
背景:番茄红素是一种天然存在的类胡萝卜素,存在于各种水果和蔬菜的全反式结构中,被认为具有潜在的抗氧化特性。本研究采用密度泛函理论(DFT)研究并比较了番茄红素异构体通过自由基清除机制的抗氧化性能。使用全局描述参数对异构体的抗氧化能力进行量化,将它们的潜力从高到低排列为5-顺式b>全反式> 9-顺式> 13-顺式。该研究确定氢原子转移(HAT)机制是抗氧化作用的主要模式,与其他机制(如顺序电子转移质子转移(SETPT)和顺序质子损失电子转移(SPLET))相比,氢原子转移(HAT)机制具有最低的键解离能。5-顺式异构体显示出最低的键解离能,表明相对于其他异构体具有更好的抗氧化活性热力学潜力。此外,活化能评估表明,在HAT自由基清除机制下,5-顺式和13-顺式异构体比9-顺式和全反式异构体更有利。该研究强调了5-顺式异构体是所研究的番茄红素异构体中热力学和动力学上最有利的抗氧化剂。方法:采用ωB97X-D/6-31 + G (d,p)级理论和高斯16软件包计算其抗氧化电位和自由基清除机制。通过前沿分子分析和全局描述参数比较了全反式、5-顺式、9-顺式和13-顺式异构体的抗氧化性能。研究了氢原子抽离(HAA)、序序电子转移质子转移(SETPT)和序序质子损失电子转移(SPLET)机理。采用QST3(同步跃迁准牛顿搜索)计算和IRC(本征反应坐标)计算对异构体自由基清除机理进行了研究。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
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