Walid Iken, Hayat El Ouafy, Loubna Halil, Soukaina Naciri, Mouad Boutkbout Nait Moudou, Mouna Aamor, Mohamed Reda Chriyaa, Tarik El Ouafy
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引用次数: 0
Abstract
Context: Despite numerous studies on alkanethiol adsorption on gold surfaces, this work uniquely investigates the impact of Au(111) surface layers relaxation on adsorption energy, electrical conductivity, and molecular geometry using density functional theory (DFT). We demonstrate that adsorption energy increases linearly with increasing relaxation layers. Notably, relaxing only the top layer yields a slope close to experimental data. Geometrically, molecules exhibit greater tilt on a fully frozen surface, except methanethiol. In terms of electrical conductivity, gap energy decreases upon adsorption when all layers are frozen. Furthermore, Fermi energy rises exponentially with adsorption energy for a frozen surface but follows a linear trend with relaxation. These insights offer a deeper understanding of surface effects on molecular adsorption.
Methods: Adsorption energies and geometric parameters were calculated by DFT with QUANTUM ESPRESSO, using GGA-PBE and Grimme D3 for van der Waals corrections. Core-valence interactions were described by PAW and pseudopotentials. Au(111) slab, constructed with VESTA, contained 3 layers.
期刊介绍:
The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling.
Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry.
Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.