Machine Learning Transition State Geometries and Applications in Reaction Property Prediction

IF 16.8 2区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY
Isaac W. Beaglehole, Miles J. Pemberton, Elliot H. E. Farrar, Matthew N. Grayson
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引用次数: 0

Abstract

The calculation of transition state (TS) geometries is essential for understanding reaction mechanisms and rational synthetic methodology design. However, traditional methods like density functional theory are often too computationally expensive for large-scale TS identification and are significantly slower than high-throughput experimental screening methods. Recent advancements in machine learning (ML) offer promising alternatives, enabling the direct prediction of TS geometries, reducing the reliance on expensive quantum mechanical (QM) calculations, and affording predictions ahead of experiments. The works explored here include the broader application of ML in reaction property prediction, emphasizing how accurate TS geometries can serve as vital input data to improve model accuracy. A comprehensive review of ML methods developed to explicitly predict TS geometries is then presented, with attention to their application in downstream tasks, such as energy barrier calculations, and their use as initial structures for further optimization via QM methods. Finally, a critical evaluation of the accuracy and limitations of existing TS prediction methods is discussed, highlighting challenges that impede wider adoption and areas where further research is needed.

Abstract Image

机器学习过渡态几何及其在反应性质预测中的应用
过渡态几何形状的计算对于理解反应机理和合理设计合成方法至关重要。然而,密度泛函理论等传统方法对于大规模TS鉴定来说计算成本太高,并且比高通量实验筛选方法慢得多。机器学习(ML)的最新进展提供了有前途的替代方案,可以直接预测TS几何形状,减少对昂贵的量子力学(QM)计算的依赖,并在实验之前提供预测。这里探讨的工作包括ML在反应性质预测中的更广泛应用,强调如何准确的TS几何形状可以作为重要的输入数据来提高模型准确性。然后介绍了用于明确预测TS几何形状的ML方法的全面回顾,并关注了它们在下游任务中的应用,例如能量势垒计算,以及它们作为通过QM方法进一步优化的初始结构。最后,讨论了对现有TS预测方法的准确性和局限性的关键评估,强调了阻碍更广泛采用的挑战和需要进一步研究的领域。
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来源期刊
Wiley Interdisciplinary Reviews: Computational Molecular Science
Wiley Interdisciplinary Reviews: Computational Molecular Science CHEMISTRY, MULTIDISCIPLINARY-MATHEMATICAL & COMPUTATIONAL BIOLOGY
CiteScore
28.90
自引率
1.80%
发文量
52
审稿时长
6-12 weeks
期刊介绍: Computational molecular sciences harness the power of rigorous chemical and physical theories, employing computer-based modeling, specialized hardware, software development, algorithm design, and database management to explore and illuminate every facet of molecular sciences. These interdisciplinary approaches form a bridge between chemistry, biology, and materials sciences, establishing connections with adjacent application-driven fields in both chemistry and biology. WIREs Computational Molecular Science stands as a platform to comprehensively review and spotlight research from these dynamic and interconnected fields.
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