Real-Time Detection of Meningiomas by Image Segmentation: A Very Deep Transfer Learning Convolutional Neural Network Approach.

IF 2.2 4区 医学 Q2 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING
Debasmita Das, Chayna Sarkar, Biswadeep Das
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引用次数: 0

Abstract

Background/objectives: Developing a treatment strategy that effectively prolongs the lives of people with brain tumors requires an accurate diagnosis of the condition. Therefore, improving the preoperative classification of meningiomas is a priority. Machine learning (ML) has made great strides thanks to the development of convolutional neural networks (CNNs) and computer-aided tumor detection systems. The deep convolutional layers automatically extract important and dependable information from the input space, in contrast to more traditional neural network layers. One recent and promising advancement in this field is ML. Still, there is a dearth of studies being carried out in this area.

Methods: Therefore, starting with the analysis of magnetic resonance images, we have suggested in this research work a tried-and-tested and methodical strategy for real-time meningioma diagnosis by image segmentation using a very deep transfer learning CNN model or DNN model (VGG-16) with CUDA. Since the VGGNet CNN model has a greater level of accuracy than other deep CNN models like AlexNet, GoogleNet, etc., we have chosen to employ it. The VGG network that we have constructed with very small convolutional filters consists of 13 convolutional layers and 3 fully connected layers. Our VGGNet model takes in an sMRI FLAIR image input. The VGG's convolutional layers leverage a minimal receptive field, i.e., 3 × 3, the smallest possible size that still captures up/down and left/right. Moreover, there are also 1 × 1 convolution filters acting as a linear transformation of the input. This is followed by a ReLU unit. The convolution stride is fixed at 1 pixel to keep the spatial resolution preserved after convolution. All the hidden layers in our VGG network also use ReLU. A dataset consisting of 264 3D FLAIR sMRI image segments from three different classes (meningioma, tuberculoma, and normal) was employed. The number of epochs in the Sequential Model was set to 10. The Keras layers that we used were Dense, Dropout, Flatten, Batch Normalization, and ReLU.

Results: According to the simulation findings, our suggested model successfully classified all of the data in the dataset used, with a 99.0% overall accuracy. The performance metrics of the implemented model and confusion matrix for tumor classification indicate the model's high accuracy in brain tumor classification.

Conclusions: The good outcomes demonstrate the possibility of our suggested method as a useful diagnostic tool, promoting better understanding, a prognostic tool for clinical outcomes, and an efficient brain tumor treatment planning tool. It was demonstrated that several performance metrics we computed using the confusion matrix of the previously used model were very good. Consequently, we think that the approach we have suggested is an important way to identify brain tumors.

基于图像分割的脑膜瘤实时检测:一种深度迁移学习卷积神经网络方法。
背景/目的:制定有效延长脑肿瘤患者生命的治疗策略需要对病情进行准确的诊断。因此,改善脑膜瘤的术前分类是当务之急。由于卷积神经网络(cnn)和计算机辅助肿瘤检测系统的发展,机器学习(ML)取得了巨大的进步。与传统的神经网络层相比,深度卷积层自动从输入空间中提取重要和可靠的信息。这个领域最近有一个很有前途的进展是ML。然而,在这个领域进行的研究还很缺乏。方法:因此,从磁共振图像分析开始,我们在本研究工作中提出了一种久经检验的、有条不紊的策略,通过图像分割,使用极深迁移学习CNN模型或DNN模型(VGG-16)与CUDA进行实时脑膜瘤诊断。由于VGGNet CNN模型比其他深度CNN模型(如AlexNet, GoogleNet等)具有更高的准确性,因此我们选择使用它。我们用非常小的卷积滤波器构建的VGG网络由13个卷积层和3个全连接层组成。我们的VGGNet模型采用sMRI FLAIR图像输入。VGG的卷积层利用最小的接受场,即3 × 3,这是仍然捕获上下和左右的最小可能大小。此外,还有1 × 1卷积滤波器作为输入的线性变换。接下来是一个ReLU单元。将卷积步幅固定为1像素,以保持卷积后的空间分辨率。我们的VGG网络中的所有隐藏层也都使用了ReLU。使用了一个由264个来自三种不同类别(脑膜瘤、结核瘤和正常)的3D FLAIR sMRI图像片段组成的数据集。顺序模型中的历元数设置为10。我们使用的Keras层是Dense, Dropout, Flatten, Batch Normalization和ReLU。结果:根据模拟结果,我们建议的模型成功地对所使用数据集中的所有数据进行了分类,总体准确率为99.0%。所实现模型的性能指标和肿瘤分类混淆矩阵表明该模型在脑肿瘤分类中具有较高的准确率。结论:良好的结果表明,我们建议的方法可能作为一种有用的诊断工具,促进更好的理解,临床预后工具,以及有效的脑肿瘤治疗计划工具。结果表明,我们使用先前使用的模型的混淆矩阵计算的几个性能指标非常好。因此,我们认为我们提出的方法是识别脑肿瘤的重要方法。
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来源期刊
Tomography
Tomography Medicine-Radiology, Nuclear Medicine and Imaging
CiteScore
2.70
自引率
10.50%
发文量
222
期刊介绍: TomographyTM publishes basic (technical and pre-clinical) and clinical scientific articles which involve the advancement of imaging technologies. Tomography encompasses studies that use single or multiple imaging modalities including for example CT, US, PET, SPECT, MR and hyperpolarization technologies, as well as optical modalities (i.e. bioluminescence, photoacoustic, endomicroscopy, fiber optic imaging and optical computed tomography) in basic sciences, engineering, preclinical and clinical medicine. Tomography also welcomes studies involving exploration and refinement of contrast mechanisms and image-derived metrics within and across modalities toward the development of novel imaging probes for image-based feedback and intervention. The use of imaging in biology and medicine provides unparalleled opportunities to noninvasively interrogate tissues to obtain real-time dynamic and quantitative information required for diagnosis and response to interventions and to follow evolving pathological conditions. As multi-modal studies and the complexities of imaging technologies themselves are ever increasing to provide advanced information to scientists and clinicians. Tomography provides a unique publication venue allowing investigators the opportunity to more precisely communicate integrated findings related to the diverse and heterogeneous features associated with underlying anatomical, physiological, functional, metabolic and molecular genetic activities of normal and diseased tissue. Thus Tomography publishes peer-reviewed articles which involve the broad use of imaging of any tissue and disease type including both preclinical and clinical investigations. In addition, hardware/software along with chemical and molecular probe advances are welcome as they are deemed to significantly contribute towards the long-term goal of improving the overall impact of imaging on scientific and clinical discovery.
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