Casey Van Stappen, Edward Reijerse, Sonia Chabbra, Alexander Schnegg, Yi Lu
{"title":"Contrasting secondary coordination sphere effects on spin density distribution in Red vs. Blue Cu azurin.","authors":"Casey Van Stappen, Edward Reijerse, Sonia Chabbra, Alexander Schnegg, Yi Lu","doi":"10.1007/s00775-025-02116-x","DOIUrl":null,"url":null,"abstract":"<p><p>Metalloproteins tune the electronic properties of metal active sites through a combination of primary and secondary coordination sphere effects (PCS and SCS) to efficiently perform an array of redox chemistry, including electron transfer (ET) and catalysis. A major influence of these effects is the anisotropic spatial distribution of redox-active molecular orbitals (RAMOs), which in turn dictates redox chemistry of the metalloproteins. While much progress has been made in understanding the SCS effects on RAMOs in individual native metalloproteins, it has been difficult to experimentally examine the influence of the same SCS effects on RAMOs with different spatial distributions. Taking advantage of our recent studies of SCS effect on blue copper azurin from Pseudomonas aeruginosa (Blue CuAz) and its M121H/H46E variant that closely mimic the red copper protein (Red CuAz), in which their RAMOs are dominated by either Cu-S<sub>π</sub> or Cu-S<sub>σ</sub> interactions, respectively, we herein compare and contrast how the same SCS modifications impact the electronic and geometric structures of blue and red Cu center in the same protein scaffold. Specifically, we expand our understanding of unpaired electron distribution at the Cu-binding site of Red CuAz and its SCS N47S, F114P, and F114N mutations using <sup>1</sup>H and <sup>14</sup>N electron-nuclear double resonance (ENDOR) spectroscopy, and then further combine these data sets with recent studies and DFT calculations to provide insight into how these mutations differentially (or similarly) impact electronic structure in Red vs. Blue CuAz. We find that electrostatics produce similar effects in both Red and Blue CuAz, where the introduction of dipole moments in the vicinity of Cu and S produces changes in spin density distribution and of the same sign and comparable magnitude. However, disruption of H-bonding with S through the F114P mutation leads to opposing effects in Red vs. Blue CuAz, which we propose arise from differences in the conformation of Cys112 sidechain adapted in the absence the stabilizing S<sub>C112</sub>⋯H-N backbone interaction.</p>","PeriodicalId":603,"journal":{"name":"Journal of Biological Inorganic Chemistry","volume":" ","pages":""},"PeriodicalIF":2.7000,"publicationDate":"2025-05-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Biological Inorganic Chemistry","FirstCategoryId":"1","ListUrlMain":"https://doi.org/10.1007/s00775-025-02116-x","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Metalloproteins tune the electronic properties of metal active sites through a combination of primary and secondary coordination sphere effects (PCS and SCS) to efficiently perform an array of redox chemistry, including electron transfer (ET) and catalysis. A major influence of these effects is the anisotropic spatial distribution of redox-active molecular orbitals (RAMOs), which in turn dictates redox chemistry of the metalloproteins. While much progress has been made in understanding the SCS effects on RAMOs in individual native metalloproteins, it has been difficult to experimentally examine the influence of the same SCS effects on RAMOs with different spatial distributions. Taking advantage of our recent studies of SCS effect on blue copper azurin from Pseudomonas aeruginosa (Blue CuAz) and its M121H/H46E variant that closely mimic the red copper protein (Red CuAz), in which their RAMOs are dominated by either Cu-Sπ or Cu-Sσ interactions, respectively, we herein compare and contrast how the same SCS modifications impact the electronic and geometric structures of blue and red Cu center in the same protein scaffold. Specifically, we expand our understanding of unpaired electron distribution at the Cu-binding site of Red CuAz and its SCS N47S, F114P, and F114N mutations using 1H and 14N electron-nuclear double resonance (ENDOR) spectroscopy, and then further combine these data sets with recent studies and DFT calculations to provide insight into how these mutations differentially (or similarly) impact electronic structure in Red vs. Blue CuAz. We find that electrostatics produce similar effects in both Red and Blue CuAz, where the introduction of dipole moments in the vicinity of Cu and S produces changes in spin density distribution and of the same sign and comparable magnitude. However, disruption of H-bonding with S through the F114P mutation leads to opposing effects in Red vs. Blue CuAz, which we propose arise from differences in the conformation of Cys112 sidechain adapted in the absence the stabilizing SC112⋯H-N backbone interaction.
金属蛋白通过一级和二级配位球效应(PCS和SCS)调节金属活性位点的电子性质,从而有效地进行一系列氧化还原化学,包括电子转移(ET)和催化。这些效应的主要影响是氧化还原活性分子轨道(RAMOs)的各向异性空间分布,这反过来又决定了金属蛋白的氧化还原化学。虽然在了解单个天然金属蛋白中SCS对RAMOs的影响方面已经取得了很大进展,但实验研究相同的SCS对不同空间分布的RAMOs的影响一直很困难。利用我们最近对铜绿假单胞菌(Pseudomonas aeruginosa, blue CuAz)及其M121H/H46E突变体的影响研究,我们比较和对比了相同的SCS修饰如何影响相同蛋白质支架中蓝色和红色Cu中心的电子和几何结构,它们的RAMOs分别由Cu- s - π或Cu- s - σ相互作用主导。具体来说,我们使用1H和14N电子核双共振(ENDOR)光谱扩展了我们对红色CuAz及其SCS N47S, F114P和F114N突变的cu结合位点的未配对电子分布的理解,然后进一步将这些数据集与最近的研究和DFT计算相结合,以深入了解这些突变如何差异(或相似)影响红色和蓝色CuAz的电子结构。我们发现静电在红色和蓝色CuAz中产生类似的效应,其中在Cu和S附近引入偶极矩会产生自旋密度分布的变化,并且具有相同的符号和相当的幅度。然而,通过F114P突变破坏与S的氢键会导致红色与蓝色CuAz中的相反效应,我们认为这是由于在缺乏稳定的SC112⋯H-N骨干相互作用的情况下适应的Cys112侧链构象的差异。
期刊介绍:
Biological inorganic chemistry is a growing field of science that embraces the principles of biology and inorganic chemistry and impacts other fields ranging from medicine to the environment. JBIC (Journal of Biological Inorganic Chemistry) seeks to promote this field internationally. The Journal is primarily concerned with advances in understanding the role of metal ions within a biological matrix—be it a protein, DNA/RNA, or a cell, as well as appropriate model studies. Manuscripts describing high-quality original research on the above topics in English are invited for submission to this Journal. The Journal publishes original articles, minireviews, and commentaries on debated issues.