Screening for biomarkers of bronchopulmonary dysplasia: a bioinformatics analysis.

IF 1.5 4区 医学 Q2 PEDIATRICS
Translational pediatrics Pub Date : 2025-04-30 Epub Date: 2025-04-27 DOI:10.21037/tp-2024-595
Xiaoqun Zhang, Linzhou Zhu, Huawei Wang, Jinhui Hu, Jie Huo, Shan He, Yueping Shen, Xueping Zhu
{"title":"Screening for biomarkers of bronchopulmonary dysplasia: a bioinformatics analysis.","authors":"Xiaoqun Zhang, Linzhou Zhu, Huawei Wang, Jinhui Hu, Jie Huo, Shan He, Yueping Shen, Xueping Zhu","doi":"10.21037/tp-2024-595","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>Bronchopulmonary dysplasia (BPD) is a common chronic respiratory disease in preterm infants, and its incidence has gradually increased with advances in medical technology. BPD is associated with multiple complications, significantly impacting the quality of life of affected infants and imposing substantial economic burdens on families and society. Currently, the molecular mechanisms of BPD are not fully understood, and effective treatments are lacking. MicroRNAs (miRNAs), as important gene regulatory molecules, play a critical role in lung development and BPD. This study aims to investigate the potential role of miRNAs in BPD, with a particular focus on miR-9-5p and guanosine triphosphate cyclohydrolase 1 (GCH1).</p><p><strong>Methods: </strong>Differential expression analysis of genes and miRNAs was conducted using the Gene Expression Omnibus (GEO) database. A hyperoxia-induced injury cell model was constructed to examine the expression of miR-9-5p. Target genes of miR-9-5p were predicted using online databases, followed by functional and protein interaction network analyses. In addition, cell culture, real-time quantitative polymerase chain reaction (RT-qPCR), western blotting, reactive oxygen species (ROS) level detection, malondialdehyde (MDA) assay, and Fe<sup>2+</sup> detection experiments were performed.</p><p><strong>Results: </strong>In the GSE108755 dataset, miR-9-5p was found to be upregulated in the blood of infants with BPD. In the hyperoxia-induced injury cell model, miR-9-5p expression was significantly increased. GCH1 was identified as a target gene through intersection with ferroptosis regulatory gene sets. In the cell model, GCH1 expression was markedly downregulated, while ROS, MDA, and Fe<sup>2+</sup> levels were significantly elevated.</p><p><strong>Conclusions: </strong>This study provides new insights into the molecular mechanisms of BPD, suggesting that miR-9-5p and GCH1 may serve as potential therapeutic targets for BPD. The findings contribute to a deeper understanding of the molecular basis of BPD, providing theoretical and experimental support for its diagnosis and treatment strategies. Future research will further explore the regulatory relationship between miR-9-5p and GCH1 and their roles in animal models, cell models, and clinical patients.</p>","PeriodicalId":23294,"journal":{"name":"Translational pediatrics","volume":"14 4","pages":"658-670"},"PeriodicalIF":1.5000,"publicationDate":"2025-04-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12079683/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Translational pediatrics","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.21037/tp-2024-595","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/4/27 0:00:00","PubModel":"Epub","JCR":"Q2","JCRName":"PEDIATRICS","Score":null,"Total":0}
引用次数: 0

Abstract

Background: Bronchopulmonary dysplasia (BPD) is a common chronic respiratory disease in preterm infants, and its incidence has gradually increased with advances in medical technology. BPD is associated with multiple complications, significantly impacting the quality of life of affected infants and imposing substantial economic burdens on families and society. Currently, the molecular mechanisms of BPD are not fully understood, and effective treatments are lacking. MicroRNAs (miRNAs), as important gene regulatory molecules, play a critical role in lung development and BPD. This study aims to investigate the potential role of miRNAs in BPD, with a particular focus on miR-9-5p and guanosine triphosphate cyclohydrolase 1 (GCH1).

Methods: Differential expression analysis of genes and miRNAs was conducted using the Gene Expression Omnibus (GEO) database. A hyperoxia-induced injury cell model was constructed to examine the expression of miR-9-5p. Target genes of miR-9-5p were predicted using online databases, followed by functional and protein interaction network analyses. In addition, cell culture, real-time quantitative polymerase chain reaction (RT-qPCR), western blotting, reactive oxygen species (ROS) level detection, malondialdehyde (MDA) assay, and Fe2+ detection experiments were performed.

Results: In the GSE108755 dataset, miR-9-5p was found to be upregulated in the blood of infants with BPD. In the hyperoxia-induced injury cell model, miR-9-5p expression was significantly increased. GCH1 was identified as a target gene through intersection with ferroptosis regulatory gene sets. In the cell model, GCH1 expression was markedly downregulated, while ROS, MDA, and Fe2+ levels were significantly elevated.

Conclusions: This study provides new insights into the molecular mechanisms of BPD, suggesting that miR-9-5p and GCH1 may serve as potential therapeutic targets for BPD. The findings contribute to a deeper understanding of the molecular basis of BPD, providing theoretical and experimental support for its diagnosis and treatment strategies. Future research will further explore the regulatory relationship between miR-9-5p and GCH1 and their roles in animal models, cell models, and clinical patients.

筛选支气管肺发育不良的生物标志物:生物信息学分析。
背景:支气管肺发育不良(BPD)是一种常见于早产儿的慢性呼吸系统疾病,随着医疗技术的进步,其发病率逐渐增加。BPD与多种并发症相关,严重影响患儿的生活质量,给家庭和社会带来沉重的经济负担。目前,BPD的分子机制尚不完全清楚,缺乏有效的治疗方法。MicroRNAs (miRNAs)作为重要的基因调控分子,在肺发育和BPD中起着关键作用。本研究旨在探讨mirna在BPD中的潜在作用,特别关注miR-9-5p和鸟苷三磷酸环水解酶1 (GCH1)。方法:利用基因表达综合数据库(Gene expression Omnibus, GEO)对基因和mirna进行差异表达分析。构建高氧损伤细胞模型,检测miR-9-5p的表达。使用在线数据库预测miR-9-5p的靶基因,然后进行功能和蛋白质相互作用网络分析。同时进行细胞培养、实时定量聚合酶链反应(RT-qPCR)、western blotting、活性氧(ROS)水平检测、丙二醛(MDA)测定、Fe2+检测等实验。结果:在GSE108755数据集中,发现miR-9-5p在BPD婴儿血液中上调。在高氧损伤细胞模型中,miR-9-5p表达显著升高。GCH1通过与铁下垂调控基因集的交叉鉴定为靶基因。在细胞模型中,GCH1表达明显下调,ROS、MDA、Fe2+水平显著升高。结论:本研究为BPD的分子机制提供了新的见解,提示miR-9-5p和GCH1可能是BPD的潜在治疗靶点。这些发现有助于深入了解BPD的分子基础,为BPD的诊断和治疗策略提供理论和实验支持。未来的研究将进一步探讨miR-9-5p与GCH1的调控关系及其在动物模型、细胞模型和临床患者中的作用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Translational pediatrics
Translational pediatrics Medicine-Pediatrics, Perinatology and Child Health
CiteScore
4.50
自引率
5.00%
发文量
108
期刊介绍: Information not localized
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信