Cell-based determination of HDAC10-mediated polyamine deacetylase activity.

4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology
Methods in enzymology Pub Date : 2025-01-01 Epub Date: 2025-02-22 DOI:10.1016/bs.mie.2025.01.047
Ishika Gupta, Ashley Nwafor, Robert A Casero, Tracy Murray Stewart
{"title":"Cell-based determination of HDAC10-mediated polyamine deacetylase activity.","authors":"Ishika Gupta, Ashley Nwafor, Robert A Casero, Tracy Murray Stewart","doi":"10.1016/bs.mie.2025.01.047","DOIUrl":null,"url":null,"abstract":"<p><p>Among histone deacetylases, HDAC10 is unique in its substrate preference for a specific acetylated polyamine, N<sup>8</sup>-acetylspermidine (N<sup>8</sup>-AcSpd), over other acetylated polyamines and peptides. As a polyamine deacetylase, HDAC10 catalyzes the conversion of N<sup>8</sup>-AcSpd into spermidine, thereby enabling the cell to utilize this acetylated derivative to support polyamine homeostasis. Therefore, the level of HDAC10-mediated PDAC activity in a particular tissue and its exposure to extracellular N<sup>8</sup>-AcSpd, a byproduct of certain intestinal microbes, may directly contribute to the maintenance of intracellular polyamine concentrations. This chapter provides detailed methods for determining relative levels of HDAC10-mediated polyamine deacetylase activity using cell-based assays. These cost-efficient methods are useful for identifying tissue-specific differences in PDAC activity and may also be adapted to enable high-throughput screening of effectors of HDAC10 function, such as HDAC inhibitors.</p>","PeriodicalId":18662,"journal":{"name":"Methods in enzymology","volume":"715 ","pages":"337-349"},"PeriodicalIF":0.0000,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Methods in enzymology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1016/bs.mie.2025.01.047","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/2/22 0:00:00","PubModel":"Epub","JCR":"Q3","JCRName":"Biochemistry, Genetics and Molecular Biology","Score":null,"Total":0}
引用次数: 0

Abstract

Among histone deacetylases, HDAC10 is unique in its substrate preference for a specific acetylated polyamine, N8-acetylspermidine (N8-AcSpd), over other acetylated polyamines and peptides. As a polyamine deacetylase, HDAC10 catalyzes the conversion of N8-AcSpd into spermidine, thereby enabling the cell to utilize this acetylated derivative to support polyamine homeostasis. Therefore, the level of HDAC10-mediated PDAC activity in a particular tissue and its exposure to extracellular N8-AcSpd, a byproduct of certain intestinal microbes, may directly contribute to the maintenance of intracellular polyamine concentrations. This chapter provides detailed methods for determining relative levels of HDAC10-mediated polyamine deacetylase activity using cell-based assays. These cost-efficient methods are useful for identifying tissue-specific differences in PDAC activity and may also be adapted to enable high-throughput screening of effectors of HDAC10 function, such as HDAC inhibitors.

基于细胞的hdac10介导的多胺去乙酰酶活性测定。
在组蛋白去乙酰化酶中,HDAC10的独特之处在于它对特定乙酰化多胺n8 -乙酰亚精胺(N8-AcSpd)的底物偏好优于其他乙酰化多胺和肽。作为一种多胺去乙酰化酶,HDAC10催化N8-AcSpd转化为亚精胺,从而使细胞能够利用这种乙酰化衍生物来支持多胺稳态。因此,特定组织中hdac10介导的PDAC活性水平及其暴露于细胞外N8-AcSpd(某些肠道微生物的副产物)可能直接有助于维持细胞内多胺浓度。本章提供了使用基于细胞的测定方法来确定hdac10介导的多胺去乙酰酶活性的相对水平的详细方法。这些具有成本效益的方法可用于鉴定PDAC活性的组织特异性差异,也可用于HDAC10功能效应物(如HDAC抑制剂)的高通量筛选。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Methods in enzymology
Methods in enzymology 生物-生化研究方法
CiteScore
2.90
自引率
0.00%
发文量
308
审稿时长
3-6 weeks
期刊介绍: The critically acclaimed laboratory standard for almost 50 years, Methods in Enzymology is one of the most highly respected publications in the field of biochemistry. Each volume is eagerly awaited, frequently consulted, and praised by researchers and reviewers alike. Now with over 500 volumes the series contains much material still relevant today and is truly an essential publication for researchers in all fields of life sciences, including microbiology, biochemistry, cancer research and genetics-just to name a few. Five of the 2013 Nobel Laureates have edited or contributed to volumes of MIE.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信