A novel prognostic framework for HBV-infected hepatocellular carcinoma: insights from ferroptosis and iron metabolism proteomics.

IF 6.8 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS
Zhiwei Cheng, Yongyong Ren, Xinbo Wang, Yuening Zhang, Yingqi Hua, Hongyu Zhao, Hui Lu
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Abstract

Effective classification methods and prognostic models enable more accurate classification and treatment of hepatocellular carcinoma (HCC) patients. However, the weak correlation between RNA and protein data has limited the clinical utility of previous RNA-based prognostic models for HCC. In this work, we constructed a novel prognostic framework for HCC patients using seven differentially expressed proteins associated with ferroptosis and iron metabolism. Furthermore, this prognostic model robustly classifies HCC patients into three clinically relevant risk groups. Significant differences in overall survival, age, tumor differentiation, microvascular invasion, distant metastasis, and alpha-fetoprotein levels were observed among the risk groups. Based on the prognostic model and known biological pathways, we explored the potential mechanisms underlying the inconsistent differential expression patterns of FTH1 (Ferritin heavy chain 1) mRNA and protein. Our findings demonstrated that tumor tissues in HCC patients promote liver cancer progression by downregulating FTH1 protein expression, rather than upregulating FTH1 mRNA expression, ultimately leading to poor prognosis. Subsequently, based on risk score and tumor size, we developed a nomogram for predicting the prognosis of HCC patients, which demonstrated superior predictive performance in both the training and validation cohorts (C-index: 0.774; AUC for 1-5 years: 0.783-0.964). Additionally, our findings demonstrated that the adverse prognosis of high-risk HCC patients was closely correlated with ferroptosis in liver cancer tissues, alterations in iron metabolism, and changes in the tumor immune microenvironment. In conclusion, our prognostic model and predictive nomogram offer novel insights and tools for the effective classification of HCC patients, potentially enhancing clinical decision-making and outcomes.

乙型肝炎感染的肝细胞癌的一个新的预后框架:从铁下沉和铁代谢蛋白质组学的见解。
有效的分类方法和预后模型使肝细胞癌(HCC)患者的分类和治疗更加准确。然而,RNA和蛋白质数据之间的弱相关性限制了先前基于RNA的HCC预后模型的临床应用。在这项工作中,我们利用与铁下垂和铁代谢相关的7种差异表达蛋白构建了一个新的HCC患者预后框架。此外,该预后模型有力地将HCC患者分为三个临床相关的危险组。危险组在总生存率、年龄、肿瘤分化、微血管侵袭、远处转移和甲胎蛋白水平上存在显著差异。基于预后模型和已知的生物学途径,我们探索了FTH1(铁蛋白重链1)mRNA和蛋白不一致的差异表达模式的潜在机制。我们的研究结果表明,HCC患者的肿瘤组织通过下调FTH1蛋白表达而不是上调FTH1 mRNA表达来促进肝癌进展,最终导致预后不良。随后,基于风险评分和肿瘤大小,我们开发了一个预测HCC患者预后的nomogram,该nomogram在训练组和验证组均表现出优越的预测性能(C-index: 0.774;1-5年AUC: 0.783-0.964)。此外,我们的研究结果表明高危HCC患者的不良预后与肝癌组织铁下垂、铁代谢改变和肿瘤免疫微环境的改变密切相关。总之,我们的预后模型和预测图为HCC患者的有效分类提供了新的见解和工具,有可能提高临床决策和结果。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Briefings in bioinformatics
Briefings in bioinformatics 生物-生化研究方法
CiteScore
13.20
自引率
13.70%
发文量
549
审稿时长
6 months
期刊介绍: Briefings in Bioinformatics is an international journal serving as a platform for researchers and educators in the life sciences. It also appeals to mathematicians, statisticians, and computer scientists applying their expertise to biological challenges. The journal focuses on reviews tailored for users of databases and analytical tools in contemporary genetics, molecular and systems biology. It stands out by offering practical assistance and guidance to non-specialists in computerized methodologies. Covering a wide range from introductory concepts to specific protocols and analyses, the papers address bacterial, plant, fungal, animal, and human data. The journal's detailed subject areas include genetic studies of phenotypes and genotypes, mapping, DNA sequencing, expression profiling, gene expression studies, microarrays, alignment methods, protein profiles and HMMs, lipids, metabolic and signaling pathways, structure determination and function prediction, phylogenetic studies, and education and training.
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