Hydrophobic Interactions in Aqueous Osmolyte Solutions: Thermodynamics of Solvation and Implication on Protein Stability.

IF 2.8 2区 化学 Q3 CHEMISTRY, PHYSICAL
The Journal of Physical Chemistry B Pub Date : 2025-05-29 Epub Date: 2025-05-19 DOI:10.1021/acs.jpcb.5c00785
Cedrix J Dongmo Foumthuim
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引用次数: 0

Abstract

The effect of cosolvents urea and trimethylamine-N-oxide (TMAO) on hydrophobic association mechanisms is investigated by employing molecular dynamics simulations and free energy calculations. Three nonpolar moieties are used to model the hydrophobic interactions: n-hexane nC6H14, neopentane C5H12, and cyclohexane cC6H12. These hydrophobic model systems are subsequently immersed in four different solvent models with varied composition: pure water, aqueous urea, aqueous TMAO, and mixed urea-TMAO ternary solution. The solute-solute potentials of mean force (PMF), solute-water, and solute-cosolvent distribution functions are reported. Both urea and TMAO are found to have only moderate effects on hydrophobic associations, thereby mainly acting as glue bridging between pairwise hydrophobic moieties holding them together. Furthermore, it is seen that TMAO mediates the formation of hydrogen bonds between its oxygen atom and water or urea while still favoring the hydrophobic contacts with the hydrophobic surface, thereby acting as a kind of amphiphile displacing water or urea from the inner solvation shell of the hydrophobic solutes investigated here to the bulk. The analyses of the enthalpic and entropic contributions to PMFs indicate that configurations at the contact minimum are both enthalpically and entropically favorable, though, with a large entropic contribution, whereas solute-separated minimum configurations are dominantly enthalpically driven, induced by stabilizing water hydrogen bonding. To provide a more factual and general perspective to the simplistic hydrophobic models, simulations are also performed on a realistic-like hydrophobic model, β2-microglobulin (β2m), a paradigmatic protein model for amyloid studies. Results show that TMAO protects the β2m folded state by its strong preferential exclusion from the close vicinity of its surface. Contrariwise, urea moieties likely accumulate at the protein surface, thereby displacing water molecules from the hydration shell to the bulk, thus promoting an unfolded state of the protein.

渗透水溶液中的疏水相互作用:溶剂化热力学及其对蛋白质稳定性的影响。
采用分子动力学模拟和自由能计算方法研究了共溶剂尿素和三甲胺- n -氧化物(TMAO)对疏水缔合机制的影响。三个非极性基团被用来模拟疏水相互作用:正己烷nC6H14,新戊烷C5H12和环己烷cC6H12。这些疏水模型系统随后浸入四种不同组成的溶剂模型中:纯水、水性尿素、水性氧化三甲胺和混合尿素-氧化三甲胺三元溶液。报道了平均力(PMF)、溶质-水和溶质-助溶剂分布函数的溶质-溶质势。研究发现,尿素和氧化三甲胺对疏水缔合的影响都不大,因此它们主要是作为胶水桥接在成对的疏水基团之间,使它们结合在一起。此外,TMAO介导其氧原子与水或尿素之间形成氢键,同时仍有利于与疏水表面的疏水接触,从而作为一种两亲性物质将水或尿素从本文研究的疏水溶质的内溶剂化壳中置换到体中。对PMFs的焓和熵贡献的分析表明,接触最小的构型在焓和熵上都是有利的,但熵贡献很大,而溶质分离的最小构型主要是由稳定水氢键引起的焓驱动的。为了给简单的疏水模型提供一个更真实和普遍的视角,模拟也在一个类似现实的疏水模型上进行,β2-微球蛋白(β2m),淀粉样蛋白研究的典型蛋白质模型。结果表明,氧化三甲胺对β2m折叠态的保护作用是通过其表面附近的强优先排斥作用实现的。相反,尿素部分可能积聚在蛋白质表面,从而将水分子从水合壳置换到整体,从而促进蛋白质的未折叠状态。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
CiteScore
5.80
自引率
9.10%
发文量
965
审稿时长
1.6 months
期刊介绍: An essential criterion for acceptance of research articles in the journal is that they provide new physical insight. Please refer to the New Physical Insights virtual issue on what constitutes new physical insight. Manuscripts that are essentially reporting data or applications of data are, in general, not suitable for publication in JPC B.
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