Semantic hyperspectral image synthesis for cross-modality knowledge transfer in surgical data science.

IF 2.3 3区 医学 Q3 ENGINEERING, BIOMEDICAL
Viet Tran Ba, Marco Hübner, Ahmad Bin Qasim, Maike Rees, Jan Sellner, Silvia Seidlitz, Evangelia Christodoulou, Berkin Özdemir, Alexander Studier-Fischer, Felix Nickel, Leonardo Ayala, Lena Maier-Hein
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引用次数: 0

Abstract

Purpose: Hyperspectral imaging (HSI) is a promising intraoperative imaging modality, with potential applications ranging from tissue classification and discrimination to perfusion monitoring and cancer detection. However, surgical HSI datasets are scarce, hindering the development of robust data-driven algorithms. The purpose of this work was to address this critical bottleneck with a novel approach to knowledge transfer across modalities.

Methods: We propose the use of generative modeling to leverage imaging data across optical imaging modalities. The core of the method is a latent diffusion model (LDM) capable of converting a semantic segmentation mask obtained from any modality into a realistic hyperspectral image, such that geometry information can be learned across modalities. The value of the approach was assessed both qualitatively and quantitatively using surgical scene segmentation as a downstream task.

Results: Our study with more than 13,000 hyperspectral images, partially annotated with a total of 37 tissue and object classes, suggests that LDMs are well-suited for the synthesis of realistic high-resolution hyperspectral images even when trained on few samples or applied to annotations from different modalities and geometric out-of-distribution annotations. Using our approach for generative augmentation yielded a performance boost of up to 35% in the Dice similarity coefficient for the task of semantic hyperspectral image segmentation.

Conclusion: As our method is capable of augmenting HSI datasets in a manner agnostic to the modality of the leveraged data, it could serve as a blueprint for addressing the data bottleneck encountered for novel imaging modalities.

用于外科数据科学跨模态知识转移的语义高光谱图像合成。
目的:高光谱成像(HSI)是一种很有前途的术中成像方式,从组织分类和鉴别到灌注监测和癌症检测都有潜在的应用前景。然而,外科HSI数据集是稀缺的,阻碍了稳健的数据驱动算法的发展。这项工作的目的是解决这一关键的瓶颈与跨模式的知识转移的新方法。方法:我们建议使用生成式建模来利用跨光学成像模式的成像数据。该方法的核心是一个潜在扩散模型(LDM),该模型能够将从任何模态获得的语义分割掩模转换为真实的高光谱图像,从而可以跨模态学习几何信息。将手术场景分割作为下游任务,定性和定量地评估了该方法的价值。结果:我们对超过13,000张高光谱图像的研究表明,ldm非常适合合成真实的高分辨率高光谱图像,即使在少数样本上训练或应用于不同模式的注释和几何分布外注释。使用我们的生成增强方法,在语义高光谱图像分割任务中,Dice相似系数的性能提升高达35%。结论:由于我们的方法能够以一种与杠杆数据的模式无关的方式增加HSI数据集,因此它可以作为解决新成像模式遇到的数据瓶颈的蓝图。
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来源期刊
International Journal of Computer Assisted Radiology and Surgery
International Journal of Computer Assisted Radiology and Surgery ENGINEERING, BIOMEDICAL-RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING
CiteScore
5.90
自引率
6.70%
发文量
243
审稿时长
6-12 weeks
期刊介绍: The International Journal for Computer Assisted Radiology and Surgery (IJCARS) is a peer-reviewed journal that provides a platform for closing the gap between medical and technical disciplines, and encourages interdisciplinary research and development activities in an international environment.
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