Inter-organ correlation based multi-task deep learning model for dynamically predicting functional deterioration in multiple organ systems of ICU patients.

IF 4 3区 生物学 Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Zhixuan Zeng, Yang Liu, Shuo Yao, Minjie Lin, Xu Cai, Wenbin Nan, Yiyang Xie, Xun Gong
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引用次数: 0

Abstract

Background: Functional deterioration (FD) of various organ systems is the major cause of death in ICU patients, but few studies propose effective multi-task (MT) model to predict FD of multiple organs simultaneously. This study propose a MT deep learning model named inter-organ correlation based multi-task model (IOC-MT), to dynamically predict FD in six organ systems.

Methods: Three public ICU databases were used for model training and validation. The IOC-MT was designed based on the routine MT deep learning framework, but it used a Graph Attention Networks (GAT) module to capture inter-organ correlation and an adaptive adjustment mechanism (AAM) to adjust prediction. We compared the IOC-MT to five single-task (ST) baseline models, including three deep models (LSTM-ST, GRU-ST, Transformer-ST) and two machine learning models (GRU-ST, RF-ST), and performed ablation study to assess the contribution of important components in IOC-MT. Model discrimination was evaluated by AUROC and AUPRC, and model calibration was assessed by the calibration curve. The attention weight and adjustment coefficient were analyzed at both overall and individual level to show the AAM of IOC-MT.

Results: The IOC-MT had comparable discrimination and calibration to LSTM-ST, GRU-ST and Transformer-ST for most organs under different gap windows in the internal and external validation, and obviously outperformed GRU-ST, RF-ST. The ablation study showed that the GAT, AAM and missing indicator could improve the overall performance of the model. Furthermore, the inter-organ correlation and prediction adjustment of IOC-MT were intuitive and comprehensible, and also had biological plausibility.

Conclusions: The IOC-MT is a promising MT model for dynamically predicting FD in six organ systems. It can capture inter-organ correlation and adjust the prediction for one organ based on aggregated information from the other organs.

基于器官间相关性的多任务深度学习模型动态预测ICU患者多器官系统功能恶化。
背景:各脏器系统功能恶化(Functional degradation, FD)是ICU患者死亡的主要原因,但目前很少有研究提出有效的多任务(multi-task, MT)模型来同时预测多脏器功能恶化。本研究提出了一种基于器官间相关的多任务模型(IOC-MT)的机器学习深度模型,用于动态预测六个器官系统的FD。方法:使用3个ICU公共数据库进行模型训练和验证。ioc -机器翻译是在常规机器翻译深度学习框架的基础上设计的,但它使用了一个图注意网络(GAT)模块来捕获器官间的相关性,并使用了一个自适应调整机制(AAM)来调整预测。我们将IOC-MT与5个单任务(ST)基线模型进行了比较,包括3个深度模型(LSTM-ST、GRU-ST、Transformer-ST)和2个机器学习模型(GRU-ST、RF-ST),并进行了消融研究,以评估IOC-MT中重要成分的贡献。用AUROC和AUPRC评价模型判别,用标定曲线评价模型定标。从整体和个体两个层面分析了IOC-MT的注意权值和调节系数。结果:IOC-MT与LSTM-ST、GRU-ST和Transformer-ST在不同间隙窗的内、外验证中,对大多数器官具有相当的鉴别和校准能力,且明显优于GRU-ST、RF-ST。烧蚀研究表明,GAT、AAM和缺失指标可以提高模型的整体性能。此外,IOC-MT的器官间相关性和预测调整直观易懂,具有生物学合理性。结论:IOC-MT是一种很有前途的动态预测六个器官系统FD的MT模型。它可以捕获器官间的相关性,并根据来自其他器官的汇总信息调整对一个器官的预测。
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来源期刊
Biodata Mining
Biodata Mining MATHEMATICAL & COMPUTATIONAL BIOLOGY-
CiteScore
7.90
自引率
0.00%
发文量
28
审稿时长
23 weeks
期刊介绍: BioData Mining is an open access, open peer-reviewed journal encompassing research on all aspects of data mining applied to high-dimensional biological and biomedical data, focusing on computational aspects of knowledge discovery from large-scale genetic, transcriptomic, genomic, proteomic, and metabolomic data. Topical areas include, but are not limited to: -Development, evaluation, and application of novel data mining and machine learning algorithms. -Adaptation, evaluation, and application of traditional data mining and machine learning algorithms. -Open-source software for the application of data mining and machine learning algorithms. -Design, development and integration of databases, software and web services for the storage, management, retrieval, and analysis of data from large scale studies. -Pre-processing, post-processing, modeling, and interpretation of data mining and machine learning results for biological interpretation and knowledge discovery.
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