Effects and molecular mechanisms of the combination of Andrographis paniculata and Anredera cordifolia as an insulin sensitizer: in vitro, network pharmacology, molecular docking, and dynamics studies.
Frangky Sangande, Sri Ningsih, Kurnia Agustini, Siska Andrina Kusumastuti, Nuralih Nuralih, Adam Arditya Fajriawan, Michael Chandra, Syofi Rosmalawati, Aiyi Asnawi, Krisyanti Budipramana
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引用次数: 0
Abstract
Due to the complex mechanism of insulin resistance (IR), multi-component herbal medicines might be an alternative approach in the treatment of IR-related diseases, such as type 2 diabetes mellitus (T2DM). Andrographis paniculata (AP) and Anredera cordifolia (AC) have been reported to have anti-diabetic effects. However, their effect and mechanism of action in a mixed formula (FAPAC), especially as an insulin sensitizer have not been reported. Therefore, in vitro studies were performed to investigate the effect of FAPAC, and the molecular mechanisms were predicted by in silico studies through network pharmacology, molecular docking, and dynamics simulations. In vitro studies demonstrated that FAPAC at 2 µg/mL was comparable to metformin in increasing glucose uptake in IR-HepG2 cells. KEGG analysis revealed that IR was the top pathway and predicted that FAPAC acts as an insulin-sensitizing agent by inhibiting three main targets: IKBKB, PRKCD, and PTPN1. Consensus docking suggested 7-O-methyl wogonin, ninandrographolide, and 3-O-β-D-glucopyranosyl andrographolide as the potent inhibitors for IKBKB, PRKCD, and PTPN1, respectively. Furthermore, molecular dynamics confirmed that the potential compounds remained in the binding pocket throughout the simulation and had a good affinity toward their respective targets, comparable to native ligands.
由于胰岛素抵抗(IR)的复杂机制,多成分中药可能是治疗IR相关疾病(如2型糖尿病(T2DM))的一种替代方法。据报道,穿心莲(AP)和凤梨(AC)具有抗糖尿病作用。然而,它们在混合配方(FAPAC)中的作用和机制,特别是作为胰岛素增敏剂尚未报道。因此,我们进行了体外实验来研究FAPAC的作用,并通过网络药理学、分子对接和动力学模拟等方法通过计算机研究预测了FAPAC的分子机制。体外研究表明,2µg/mL的FAPAC在增加IR-HepG2细胞的葡萄糖摄取方面与二甲双胍相当。KEGG分析显示,IR是最重要的途径,并预测FAPAC通过抑制三个主要靶点:IKBKB、PRKCD和PTPN1来发挥胰岛素增敏剂的作用。共识对接提示7- o -甲基水仙花素、ninandrographolide和3-O-β-D-glucopyranosyl穿心莲内酯分别是IKBKB、PRKCD和PTPN1的有效抑制剂。此外,分子动力学证实,在整个模拟过程中,潜在化合物保持在结合口袋中,并且对各自的目标具有良好的亲和力,可与天然配体相比较。
期刊介绍:
The Journal of Biomolecular Structure and Dynamics welcomes manuscripts on biological structure, dynamics, interactions and expression. The Journal is one of the leading publications in high end computational science, atomic structural biology, bioinformatics, virtual drug design, genomics and biological networks.