High-dimensional mediation analysis for longitudinal mediators and survival outcomes.

IF 6.8 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS
Lili Liu, Haixiang Zhang, Yinan Zheng, Tao Gao, Cheng Zheng, Kai Zhang, Lifang Hou, Lei Liu
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Abstract

Mediation analysis with high-dimensional mediators is crucial for identifying epigenetic pathways linking environmental exposures to health outcomes. However, high-dimensional mediation analysis methods for longitudinal mediators and a survival outcome remain underdeveloped. This study fills that gap by introducing a method that captures mediation effects over time using multivariate, longitudinally measured time-varying mediators. Our approach uses a longitudinal mixed effects model to examine the relationship between the exposure and the mediating process. We connect the mediating process to the survival outcome using a Cox proportional hazards model with time-varying mediators. To handle high-dimensional data, we first employ a mediation-based sure independence screening method for dimension reduction. A Lasso inference procedure is further utilized to identify significant time-varying mediators. We adopt a joint significance test to accurately control the family wise error rate in testing high-dimensional mediation hypotheses. Simulation studies and an analysis of the Coronary Artery Risk Development in Young Adults Study demonstrate the utility and validity of our method.

纵向介质和生存结果的高维中介分析。
使用高维介质的中介分析对于确定将环境暴露与健康结果联系起来的表观遗传途径至关重要。然而,纵向介质和生存结果的高维中介分析方法仍然不发达。本研究通过引入一种方法来填补这一空白,该方法使用多变量、纵向测量的时变介质来捕获随时间推移的中介效应。我们的方法使用纵向混合效应模型来检验暴露和中介过程之间的关系。我们使用具有时变介质的Cox比例风险模型将中介过程与生存结果联系起来。为了处理高维数据,我们首先采用基于中介的确定独立筛选方法进行降维。进一步利用Lasso推理程序来识别显著时变介质。在检验高维中介假设时,我们采用联合显著性检验来精确控制家庭明智错误率。对年轻人冠状动脉风险发展的模拟研究和分析证明了我们方法的实用性和有效性。
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来源期刊
Briefings in bioinformatics
Briefings in bioinformatics 生物-生化研究方法
CiteScore
13.20
自引率
13.70%
发文量
549
审稿时长
6 months
期刊介绍: Briefings in Bioinformatics is an international journal serving as a platform for researchers and educators in the life sciences. It also appeals to mathematicians, statisticians, and computer scientists applying their expertise to biological challenges. The journal focuses on reviews tailored for users of databases and analytical tools in contemporary genetics, molecular and systems biology. It stands out by offering practical assistance and guidance to non-specialists in computerized methodologies. Covering a wide range from introductory concepts to specific protocols and analyses, the papers address bacterial, plant, fungal, animal, and human data. The journal's detailed subject areas include genetic studies of phenotypes and genotypes, mapping, DNA sequencing, expression profiling, gene expression studies, microarrays, alignment methods, protein profiles and HMMs, lipids, metabolic and signaling pathways, structure determination and function prediction, phylogenetic studies, and education and training.
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