CPDMS: a database system for crop physiological disorder management.

IF 3.4 4区 生物学 Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Jae-Hyeon Oh, Hwang-Weon Jeong, Il Pyung Ahn, Seon-Hwa Bae, Sung Mi Kim, Eunhee Kim, Su Jung Ra, Jinjeong Lee, Hye Yeon Choi, Young-Joo Seol
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引用次数: 0

Abstract

As the importance of precision agriculture grows, scalable and efficient methods for real-time data collection and analysis have become essential. In this study, we developed a system to collect real-time crop images, focusing on physiological disorders in tomatoes. This system systematically collects crop images and related data, with the potential to evolve into a valuable tool for researchers and agricultural practitioners. A total of 58 479 images were produced under stress conditions, including bacterial wilt (BW), Tomato Yellow Leaf Curl Virus (TYLCV), Tomato Spotted Wilt Virus (TSWV), drought, and salinity, across seven tomato varieties. The images include front views at 0 degrees, 120 degrees, 240 degrees, and top views and petiole images. Of these, 43 894 images were suitable for labeling. Based on this, 24 000 images were used for AI model training, and 13 037 images for model testing. By training a deep learning model, we achieved a mean Average Precision (mAP) of 0.46 and a recall rate of 0.60. Additionally, we discussed data augmentation and hyperparameter tuning strategies to improve AI model performance and explored the potential for generalizing the system across various agricultural environments. The database constructed in this study will serve as a crucial resource for the future development of agricultural AI. Database URL: https://crops.phyzen.com/.

CPDMS:作物生理失调管理数据库系统。
随着精准农业重要性的增长,实时数据收集和分析的可扩展和高效方法变得至关重要。在这项研究中,我们开发了一个系统来收集实时作物图像,专注于番茄的生理失调。该系统系统地收集作物图像和相关数据,有可能发展成为研究人员和农业从业者的宝贵工具。在包括细菌性枯萎病(BW)、番茄黄卷叶病毒(TYLCV)、番茄斑点枯萎病(TSWV)、干旱和盐度在内的胁迫条件下,共生成了58 479张图像,涉及7个番茄品种。这些图像包括0度、120度、240度的前视图,以及俯视图和叶柄图像。其中,43 894幅图像适合标记。在此基础上,人工智能模型训练使用了2.4万张图像,模型测试使用了13 037张图像。通过训练深度学习模型,我们实现了0.46的平均精度(mAP)和0.60的召回率。此外,我们讨论了数据增强和超参数调整策略,以提高人工智能模型的性能,并探索了在各种农业环境中推广系统的潜力。本研究构建的数据库将成为未来农业人工智能发展的重要资源。数据库地址:https://crops.phyzen.com/。
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来源期刊
Database: The Journal of Biological Databases and Curation
Database: The Journal of Biological Databases and Curation MATHEMATICAL & COMPUTATIONAL BIOLOGY-
CiteScore
9.00
自引率
3.40%
发文量
100
审稿时长
>12 weeks
期刊介绍: Huge volumes of primary data are archived in numerous open-access databases, and with new generation technologies becoming more common in laboratories, large datasets will become even more prevalent. The archiving, curation, analysis and interpretation of all of these data are a challenge. Database development and biocuration are at the forefront of the endeavor to make sense of this mounting deluge of data. Database: The Journal of Biological Databases and Curation provides an open access platform for the presentation of novel ideas in database research and biocuration, and aims to help strengthen the bridge between database developers, curators, and users.
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