Crystal structure of a recombinant Agaricus bisporus mushroom mannose-binding protein with a longer C-terminal region

IF 1.1 4区 生物学 Q4 BIOCHEMICAL RESEARCH METHODS
Hiromi Yoshida, Shin-ichi Nakakita, Heni Rachmawati, Raymond R. Tjandrawinata, Wangsa T. Ismaya
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Abstract

A lectin-like protein was discovered in Agaricus bisporus as part of the mushroom tyrosinase complex. The protein has a β-trefoil fold, which is typical of the ricin B-like-type lectin family. The structure of the recombinant protein has been elucidated, and its specific sugar-binding affinity towards mannose and mannitol has also been reported; therefore, the protein was named A. bisporus mannose-binding protein (Abmb). Although the sugar-binding site of Abmb is predicted to be close to the C-terminus, the sugar-binding site has not yet been determined. In this study, a variant of recombinant Abmb with a longer C-terminal region including a 6×His-tag was constructed and its structure was solved at 1.51 and 2.34 Å resolution in an orthorhombic and a monoclinic space group, respectively. The overall structure showed a β-trefoil fold as previously reported; however, several surface loop regions including the C-terminal region showed high flexibility. In addition, a glycan-search assay of this variant showed weak binding affinity towards β-d-galactose but no affinity towards α-d-mannose. The plasticity of the C-terminal tail could be related to the differences in the carbohydrate-binding affinity of Abmb.

Abstract Image

具有较长c端区的重组双孢蘑菇甘露糖结合蛋白的晶体结构。
在双孢蘑菇中发现了一种凝集素样蛋白,作为蘑菇酪氨酸酶复合物的一部分。该蛋白具有β-三叶折叠,这是典型的蓖麻毒素b型凝集素家族。重组蛋白的结构已被阐明,其对甘露糖和甘露醇的特异性糖结合亲和力也已被报道;因此,该蛋白被命名为A. bisporus甘露糖结合蛋白(Abmb)。虽然预测Abmb的糖结合位点靠近c端,但糖结合位点尚未确定。本研究构建了含有6×His-tag的c端较长的重组Abmb变体,并在正交和单斜空间群中分别以1.51和2.34 Å的分辨率对其结构进行了解析。整体结构与文献报道一致,呈β-三叶草折叠;然而,包括c端在内的几个表面环区表现出很高的柔韧性。此外,该突变体对β- d -半乳糖的结合亲和力较弱,但对α- d -甘露糖没有亲和力。c端尾部的可塑性可能与Abmb碳水化合物结合亲和力的差异有关。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Acta crystallographica. Section F, Structural biology communications
Acta crystallographica. Section F, Structural biology communications BIOCHEMICAL RESEARCH METHODSBIOCHEMISTRY &-BIOCHEMISTRY & MOLECULAR BIOLOGY
CiteScore
1.90
自引率
0.00%
发文量
95
期刊介绍: Acta Crystallographica Section F is a rapid structural biology communications journal. Articles on any aspect of structural biology, including structures determined using high-throughput methods or from iterative studies such as those used in the pharmaceutical industry, are welcomed by the journal. The journal offers the option of open access, and all communications benefit from unlimited free use of colour illustrations and no page charges. Authors are encouraged to submit multimedia content for publication with their articles. Acta Cryst. F has a dedicated online tool called publBio that is designed to make the preparation and submission of articles easier for authors.
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