DSA: Deep Self-Attention Medical Transformer Neuro-Technology for Brain Tumor Segmentation

IF 3 4区 计算机科学 Q2 ENGINEERING, ELECTRICAL & ELECTRONIC
Mariyam Siddiqah, Kashif Javed, Syed Omer Gilani, Muhammad Attique Khan, Shrooq Alsenan, Robertas Damaševic̆ius, Yudong Zhang
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引用次数: 0

Abstract

Transformer-based methods have shown remarkable outcomes in medical image segmentation tasks. Specifically, the Swin Transformer has proven to be an impressive approach for segmentation jobs, demonstrating its potential to further the discipline. Extensive research on integrating Swin Transformer architecture with U-Net models has shown significant progress toward improving segmentation accuracy. Currently, researchers are looking for innovative methods to improve the challenging segmentation accuracy of enhanced tumor regions due to their heterogeneous and indistinct boundaries. To improve its accuracy, we have proposed a modified version of Swin UNETR, DSA, which is deeper and more focused on extracting global features by an enhanced self-attention mechanism in the later stages of the encoder. It outperformed the enhancing tumor class with comparative performance for the other two classes. By fine-tuning some hyperparameters, we achieved SOTA performance for brain tumor segmentation. The proposed deep self-architecture obtained a mean dice score value of 0.889 and a mean Jaccard score of 0.806, respectively. A comparison was conducted with some recent state-of-the-art techniques, which showed improved accuracy and outperformed the recent best-performing UNet and transformer architectures.

DSA:深度自关注医疗变形神经技术用于脑肿瘤分割
基于变换的方法在医学图像分割任务中显示出显著的效果。具体来说,Swin Transformer已被证明是一种令人印象深刻的分段工作方法,展示了其进一步发展该学科的潜力。将Swin Transformer架构与U-Net模型相结合的广泛研究在提高分割精度方面取得了重大进展。目前,研究人员正在寻找创新的方法来提高增强肿瘤区域的分割精度,因为它们的边界不均匀和模糊。为了提高其准确性,我们提出了一种改进版本的Swin UNETR, DSA,该版本在编码器的后期阶段通过增强的自关注机制更深入、更专注于提取全局特征。与其他两类相比,它的表现优于增强肿瘤类。通过微调一些超参数,我们实现了SOTA在脑肿瘤分割中的性能。所提出的深度自架构的dice得分均值为0.889,Jaccard得分均值为0.806。与最近一些最先进的技术进行了比较,这些技术显示出更高的准确性,并且优于最近性能最好的UNet和变压器架构。
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来源期刊
International Journal of Imaging Systems and Technology
International Journal of Imaging Systems and Technology 工程技术-成像科学与照相技术
CiteScore
6.90
自引率
6.10%
发文量
138
审稿时长
3 months
期刊介绍: The International Journal of Imaging Systems and Technology (IMA) is a forum for the exchange of ideas and results relevant to imaging systems, including imaging physics and informatics. The journal covers all imaging modalities in humans and animals. IMA accepts technically sound and scientifically rigorous research in the interdisciplinary field of imaging, including relevant algorithmic research and hardware and software development, and their applications relevant to medical research. The journal provides a platform to publish original research in structural and functional imaging. The journal is also open to imaging studies of the human body and on animals that describe novel diagnostic imaging and analyses methods. Technical, theoretical, and clinical research in both normal and clinical populations is encouraged. Submissions describing methods, software, databases, replication studies as well as negative results are also considered. The scope of the journal includes, but is not limited to, the following in the context of biomedical research: Imaging and neuro-imaging modalities: structural MRI, functional MRI, PET, SPECT, CT, ultrasound, EEG, MEG, NIRS etc.; Neuromodulation and brain stimulation techniques such as TMS and tDCS; Software and hardware for imaging, especially related to human and animal health; Image segmentation in normal and clinical populations; Pattern analysis and classification using machine learning techniques; Computational modeling and analysis; Brain connectivity and connectomics; Systems-level characterization of brain function; Neural networks and neurorobotics; Computer vision, based on human/animal physiology; Brain-computer interface (BCI) technology; Big data, databasing and data mining.
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