Contributions to the development of prediction models for the toxicity of ionic liquids

IF 2.1 4区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY
Hayet Abdellatif, Maamar Laidi, Cherif Si-moussa, Abdeltif Amrane, Imane Euldji, Widad Benmouloud
{"title":"Contributions to the development of prediction models for the toxicity of ionic liquids","authors":"Hayet Abdellatif,&nbsp;Maamar Laidi,&nbsp;Cherif Si-moussa,&nbsp;Abdeltif Amrane,&nbsp;Imane Euldji,&nbsp;Widad Benmouloud","doi":"10.1007/s11224-024-02411-4","DOIUrl":null,"url":null,"abstract":"<div><p>Ionic liquids (ILs) are a class of compounds with unique properties that make them highly valuable in various industrial and chemical processes, but their toxicity poses significant challenges for widespread use. This study investigates the prediction of the toxicity of ILs through quantitative structure–toxicity relationship (QSTR) modeling using a support vector machine (SVM) model enhanced with various optimization algorithms. A dataset comprising 304 ILs with toxicity measured in the leukemia rat cell line (IPC-81) and an additional 14 external validation points was employed. The model uses 13 molecular descriptors. Three optimization algorithms were constructed and evaluated: dragonfly algorithm (DA), moth–flame optimization (MFO), and gray wolf optimizer (GWO). Among them, the DA-optimized SVM model demonstrated superior predictive performance with a correlation coefficient (<i>R</i>) of 0.9871, a coefficient of determination (<i>R</i><sup>2</sup>) of 0.9742, a root mean square error (<i>RMSE</i>) of 0.1787, and a mean squared error (<i>MSE</i>) of 0.0625. Additionally, the arithmetic residuals in K-groups analysis (ARKA) method was applied to reduce the dimensionality of the dataset and identify activity cliffs, areas where small changes in molecular structure result in significant shifts in toxicity. However, the DA-SVM model using the original 13 descriptors provided superior predictive accuracy compared to the ARKA-based model. The high predictive accuracy of the DA-optimized SVM model underscores its potential as a robust tool for QSTR modeling and for assessing the toxicity of ionic liquids.</p></div>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"36 3","pages":"865 - 886"},"PeriodicalIF":2.1000,"publicationDate":"2024-11-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Structural Chemistry","FirstCategoryId":"92","ListUrlMain":"https://link.springer.com/article/10.1007/s11224-024-02411-4","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0

Abstract

Ionic liquids (ILs) are a class of compounds with unique properties that make them highly valuable in various industrial and chemical processes, but their toxicity poses significant challenges for widespread use. This study investigates the prediction of the toxicity of ILs through quantitative structure–toxicity relationship (QSTR) modeling using a support vector machine (SVM) model enhanced with various optimization algorithms. A dataset comprising 304 ILs with toxicity measured in the leukemia rat cell line (IPC-81) and an additional 14 external validation points was employed. The model uses 13 molecular descriptors. Three optimization algorithms were constructed and evaluated: dragonfly algorithm (DA), moth–flame optimization (MFO), and gray wolf optimizer (GWO). Among them, the DA-optimized SVM model demonstrated superior predictive performance with a correlation coefficient (R) of 0.9871, a coefficient of determination (R2) of 0.9742, a root mean square error (RMSE) of 0.1787, and a mean squared error (MSE) of 0.0625. Additionally, the arithmetic residuals in K-groups analysis (ARKA) method was applied to reduce the dimensionality of the dataset and identify activity cliffs, areas where small changes in molecular structure result in significant shifts in toxicity. However, the DA-SVM model using the original 13 descriptors provided superior predictive accuracy compared to the ARKA-based model. The high predictive accuracy of the DA-optimized SVM model underscores its potential as a robust tool for QSTR modeling and for assessing the toxicity of ionic liquids.

对离子液体毒性预测模型的发展作出贡献
离子液体(ILs)是一类具有独特性质的化合物,在各种工业和化学过程中具有很高的价值,但其毒性对广泛使用提出了重大挑战。本研究利用支持向量机(SVM)模型,通过各种优化算法增强的定量结构-毒性关系(QSTR)模型,研究了il毒性的预测。该数据集包括在白血病大鼠细胞系(IPC-81)中测量的304种具有毒性的il和另外14个外部验证点。该模型使用13个分子描述符。构建并评价了蜻蜓优化算法(DA)、蛾焰优化算法(MFO)和灰狼优化算法(GWO) 3种优化算法。其中,da优化后的SVM模型预测效果较好,相关系数(R)为0.9871,决定系数(R2)为0.9742,均方根误差(RMSE)为0.1787,均方误差(MSE)为0.0625。此外,应用k组分析(ARKA)方法中的算术残差来降低数据集的维数并识别活性悬崖,即分子结构的微小变化导致毒性显著变化的区域。然而,与基于arka的模型相比,使用原始13个描述符的DA-SVM模型提供了更高的预测精度。da优化的支持向量机模型的高预测精度强调了它作为QSTR建模和评估离子液体毒性的强大工具的潜力。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Structural Chemistry
Structural Chemistry 化学-化学综合
CiteScore
3.80
自引率
11.80%
发文量
227
审稿时长
3.7 months
期刊介绍: Structural Chemistry is an international forum for the publication of peer-reviewed original research papers that cover the condensed and gaseous states of matter and involve numerous techniques for the determination of structure and energetics, their results, and the conclusions derived from these studies. The journal overcomes the unnatural separation in the current literature among the areas of structure determination, energetics, and applications, as well as builds a bridge to other chemical disciplines. Ist comprehensive coverage encompasses broad discussion of results, observation of relationships among various properties, and the description and application of structure and energy information in all domains of chemistry. We welcome the broadest range of accounts of research in structural chemistry involving the discussion of methodologies and structures,experimental, theoretical, and computational, and their combinations. We encourage discussions of structural information collected for their chemicaland biological significance.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信