Structure of ice VII with Hirshfeld atom refinement

IF 2.9 2区 材料科学 Q2 CHEMISTRY, MULTIDISCIPLINARY
IUCrJ Pub Date : 2025-05-01 DOI:10.1107/S2052252525002581
Roman Gajda , Michał Chodkiewicz , Dongzhou Zhang , Phuong Nguyen , Vitali Prakapenka , Krzysztof Wozniak
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引用次数: 0

Abstract

The crystal structure of cubo-ice (ice VII) has been established by single-crystal X-ray diffraction using both synchrotron and laboratory data collected at high pressure. X-ray diffraction data in both cases were refined with Hirshfeld atom refinement. Various structural models including those with ‘split’ positions of atoms were refined.
In the refinement of the crystal structures of ice, the best results obtained so far have been with neutron diffraction because the most troublemaking aspects are the hydrogen atoms. In nine out of twenty ice structures, the hydrogen atoms are disordered, which makes proper refinement more difficult. In our previous paper describing the structure of ice VI we proved that, using Hirshfeld atom refinement (HAR) based on synchrotron X-ray data, it is possible to obtain results comparable with those from neutron experiments. In this work, we investigate another structure of high-pressure disordered ice, cubo-ice (ice VII). Single crystals of cubo-ice were grown under pressure in diamond anvil cells. X-ray diffraction measurements were conducted at a synchrotron source facility (APS, University of Chicago, USA) as well as on our regular in-house laboratory diffractometer with Ag radiation. The data collected were further refined with HAR. Comparison of the structural parameters obtained with those derived from neutron diffraction showed very good agreement in terms of bond lengths and fairly good agreement in terms of hydrogen atom ADPs. We were also able to perform unconstrained refinements with various split-atom models.
用Hirshfeld原子精化法研究冰七的结构
利用同步加速器和高压下的实验室数据,用单晶x射线衍射确定了立方冰(ice VII)的晶体结构。两种情况下的x射线衍射数据都用赫什菲尔德原子精化法进行了精化。改进了各种结构模型,包括那些具有“分裂”原子位置的模型。在细化冰的晶体结构方面,迄今为止获得的最好结果是中子衍射,因为最麻烦的方面是氢原子。在20种冰结构中,有9种的氢原子是无序的,这使得适当的细化变得更加困难。在我们之前描述冰VI结构的论文中,我们证明了基于同步加速器x射线数据的Hirshfeld原子精化(HAR)有可能获得与中子实验相当的结果。在这项工作中,我们研究了高压无序冰的另一种结构,立方冰(冰VII)。单晶立方冰在压力下生长在金刚石砧细胞中。x射线衍射测量在同步加速器源设施(APS,芝加哥大学,美国)以及我们常规的内部实验室银辐射衍射仪上进行。收集的数据用HAR进一步细化。将所得的结构参数与中子衍射所得的结构参数进行比较,结果表明键长与氢原子ADPs的结构参数非常吻合。我们还能够对各种分裂原子模型进行无约束的细化。
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来源期刊
IUCrJ
IUCrJ CHEMISTRY, MULTIDISCIPLINARYCRYSTALLOGRAPH-CRYSTALLOGRAPHY
CiteScore
7.50
自引率
5.10%
发文量
95
审稿时长
10 weeks
期刊介绍: IUCrJ is a new fully open-access peer-reviewed journal from the International Union of Crystallography (IUCr). The journal will publish high-profile articles on all aspects of the sciences and technologies supported by the IUCr via its commissions, including emerging fields where structural results underpin the science reported in the article. Our aim is to make IUCrJ the natural home for high-quality structural science results. Chemists, biologists, physicists and material scientists will be actively encouraged to report their structural studies in IUCrJ.
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