Evolution of B13n (n = + 3 to − 3) wheel with electron injection/abstraction: an insight from electronic structure analysis

IF 2.1 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Sourav Ranjan Ghosh, Sasthi Charan Halder, Atish Dipankar Jana
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引用次数: 0

Abstract

Context

The planar B13+1 cluster, a prototypical molecular ‘Wankel motor’, has captivated the scientific community with its exceptional stability as well as rotor action. The present study is an exploration of how incremental electron injection/abstraction influences the electronic structure of B13 clusters with B13+1 as a reference one. It has been found that seven different charge states (from + 3 to − 3) of B13 cluster are possible, among which B13−1 triplet is the lowest energy cluster. For B13n clusters, n =  + 3 to − 2, the clusters are planar and possess C2v symmetry and their relative atomic arrangement is similar to B13+1 ground state (GS) structure in which a triangular boron core is encircled by ten peripheral boron atoms. B13−3 cluster has a different geometric arrangement of atoms like that of the B13+1 transition state (TS) structure; remains planar, possesses C2v symmetry. The different atomic arrangement of B13−3 can be assigned to the electronic structural relaxation to reduce the electronic stress arising from high negative charge. B13+1 cluster is characterized by a unique electron density distribution in the cluster plane which is analogous to a ‘tri-spoke wheel’ configuration. In it, three spokes of electron dense lines connect the triangular core to the nearly circular periphery. The present study unveils how the injection or abstraction of electrons modifies the electronic topology in the cluster plane and how the spoke-wheel geometry evolves. It has been found that, in the + 3 and + 2 charge states, the wheel consists of four and five spokes respectively. On the other hand, for all other clusters, the overall electronic topology resembles that of the tri-spoke wheel-like B13+1 cluster. AIM analysis helped to trace out and characterize the evolution of the spoke-wheel topology with electron density at ring critical points and the bond paths.

Methods

Density Functional Theory (DFT), utilizing the 6–311 + G(d) basis set and the PBE1PBE hybrid density functional, has been employed to determine the minimum energy structures of B13 clusters with different charged states. The calculations have been performed using a superfine integration grid and very tight optimization settings, as implemented in GAUSSIAN 09 Revision D.01. To address potential instabilities in SCF calculations, wavefunction stability has been thoroughly analysed. AIM analysis and various real-space functions, including electron density, Localized Orbital Locator (LOL), Phase-Space defined Fisher Information Density (PS-FID), and Electron Localization Function (ELF), have been investigated. Multiwfn 3.8 was utilized for plotting these functions.

B13n (n = + 3至−3)轮的电子注入/抽象演化:来自电子结构分析的见解
平面B13+1集群,一个典型的分子“万克尔电机”,以其卓越的稳定性和转子动作吸引了科学界。本研究以B13+1为参考,探讨增量电子注入/提取对B13簇电子结构的影响。发现B13团簇有7种不同的电荷态(从+ 3到−3),其中B13−1三重态是能量最低的团簇。对于n = + 3 ~−2的B13n簇,簇是平面的,具有C2v对称,其相对原子排列类似于B13+1基态(GS)结构,其中三角形的硼核被10个外围硼原子包围。B13−3簇具有与B13+1过渡态(TS)结构不同的原子几何排列;保持平面,具有C2v对称。B13−3的不同原子排列可以归因于电子结构弛豫,以减少高负电荷引起的电子应力。B13+1团簇具有独特的电子密度分布,类似于“三辐轮”结构。其中,三条电子密集线的辐条将三角形的核心与近乎圆形的外围连接起来。本研究揭示了电子的注入或抽取如何改变簇平面上的电子拓扑结构,以及轮辐几何结构如何演变。已经发现,在+ 3和+ 2电荷状态下,车轮分别由四个和五个辐条组成。另一方面,对于所有其他集群,整体电子拓扑结构类似于三辐轮式B13+1集群。AIM分析有助于跟踪和表征轮辐拓扑结构的演变,包括环临界点的电子密度和键合路径。方法采用密度泛函理论(DFT),利用6-311 + G(d)基集和PBE1PBE杂化密度泛函,确定不同带电态B13团簇的最小能量结构。计算使用超精细积分网格和非常严格的优化设置进行,正如在高斯09 Revision D.01中实现的那样。为了解决SCF计算中潜在的不稳定性,对波函数稳定性进行了深入分析。研究了AIM分析和各种实空间函数,包括电子密度、定域轨道定位器(LOL)、相空间定义Fisher信息密度(PS-FID)和电子定位函数(ELF)。使用Multiwfn 3.8绘制这些函数。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
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