Improved Solubility Predictions in scCO2 Using Thermodynamics-Informed Machine Learning Models

IF 5.6 2区 化学 Q1 CHEMISTRY, MEDICINAL
Dmitriy M. Makarov*, Nikolai N. Kalikin, Yury A. Budkov*, Pavel Gurikov, Sergey E. Kruchinin, Abolghasem Jouyban and Michael G. Kiselev, 
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引用次数: 0

Abstract

Accurate solubility prediction in supercritical carbon dioxide (scCO2) is crucial for optimizing experimental design by eliminating unnecessary and costly trials at an early stage, thereby streamlining the workflow. A comprehensive solubility database containing 31,975 records has been compiled, providing a foundation for developing predictive models applicable to a diverse class of chemical compounds, with a particular focus on drug-like substances. In this study, we propose a domain-aware machine learning approach that incorporates thermodynamic properties governing phase transitions to solubility predictions in scCO2. Predictive models were developed using the CatBoost algorithm and a graph-based architecture employing directed message passing to identify the most effective approach. Furthermore, auxiliary properties of the solute, including melting point, critical parameters, enthalpy of vaporization, and Gibbs free energy of solvation, were predicted as part of this work. The findings underscore the efficacy of incorporating domain-specific thermodynamic features to enhance the predictive accuracy of scCO2 solubility modeling. The interpretation and the applicability domain assessment have confirmed the qualitative selection of the employed descriptors, demonstrating their ability to generalize to unique compounds that fall outside the defined domain.

Abstract Image

使用热力学信息的机器学习模型改进scCO2溶解度预测
在超临界二氧化碳(scCO2)中准确的溶解度预测对于优化实验设计至关重要,可以在早期阶段消除不必要且昂贵的试验,从而简化工作流程。已经编制了一个包含31,975条记录的综合溶解度数据库,为开发适用于各种化合物的预测模型提供了基础,特别侧重于药物样物质。在这项研究中,我们提出了一种领域感知的机器学习方法,该方法结合了控制相变的热力学性质来预测scCO2中的溶解度。使用CatBoost算法和基于图的架构开发预测模型,采用定向消息传递来确定最有效的方法。此外,还预测了溶质的辅助性质,包括熔点、临界参数、蒸发焓和吉布斯溶剂化自由能。这些发现强调了结合特定领域热力学特征来提高scCO2溶解度建模预测准确性的有效性。解释和适用性领域评估证实了所使用描述符的定性选择,证明了它们概括到定义领域之外的独特化合物的能力。
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来源期刊
CiteScore
9.80
自引率
10.70%
发文量
529
审稿时长
1.4 months
期刊介绍: The Journal of Chemical Information and Modeling publishes papers reporting new methodology and/or important applications in the fields of chemical informatics and molecular modeling. Specific topics include the representation and computer-based searching of chemical databases, molecular modeling, computer-aided molecular design of new materials, catalysts, or ligands, development of new computational methods or efficient algorithms for chemical software, and biopharmaceutical chemistry including analyses of biological activity and other issues related to drug discovery. Astute chemists, computer scientists, and information specialists look to this monthly’s insightful research studies, programming innovations, and software reviews to keep current with advances in this integral, multidisciplinary field. As a subscriber you’ll stay abreast of database search systems, use of graph theory in chemical problems, substructure search systems, pattern recognition and clustering, analysis of chemical and physical data, molecular modeling, graphics and natural language interfaces, bibliometric and citation analysis, and synthesis design and reactions databases.
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