Joint high-resolution feature learning and vessel-shape aware convolutions for efficient vessel segmentation

IF 7 2区 医学 Q1 BIOLOGY
Xiang Zhang , Qiang Zhu , Tao Hu , Song Guo , Genqing Bian , Wei Dong , Rao Hong , Xia Ling Lin , Peng Wu , Meili Zhou , Qingsen Yan , Ghulam Mohi-ud-din , Chen Ai , Zhou Li
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引用次数: 0

Abstract

Clear imagery of retinal vessels is one of the critical shreds of evidence in specific disease diagnosis and evaluation, including sophisticated hierarchical topology and plentiful-and-intensive capillaries. In this work, we propose a new topology- and shape-aware model named Multi-branch Vessel-shaped Convolution Network (MVCN) to adaptively learn high-resolution representations from retinal vessel imagery and thereby capture high-quality topology and shape information thereon. Two steps are involved in our pipeline. The former step is proposed as Multiple High-resolution Ensemble Module (MHEM) to enhance high-resolution characteristics of retinal vessel imagery via fusing scale-invariant hierarchical topology thereof. The latter is a novel vessel-shaped convolution that captures the retinal vessel topology to emerge from unrelated fundus structures. Moreover, our MVCN of separating such topology from the fundus is a dynamical multiple sub-label generation via using epistemic uncertainty, instead of manually separating raw labels to distinguish definitive and uncertain vessels. Compared to other existing methods, our method achieves the most advanced AUC values of 98.31%, 98.80%, 98.83%, and 98.65%, and the most advanced ACC of 95.83%, 96.82%, 97.09%,and 96.66% in DRIVE, CHASE_DB1, STARE, and HRF datasets. We also employ correctness, completeness, and quality metrics to evaluate skeletal similarity. Our method’s evaluation metrics have doubled compared to previous methods, thereby demonstrating the effectiveness thereof.

Abstract Image

联合高分辨率特征学习和血管形状感知卷积用于有效的血管分割
视网膜血管的清晰图像是特定疾病诊断和评估的关键证据之一,包括复杂的分层拓扑结构和丰富密集的毛细血管。在这项工作中,我们提出了一种新的拓扑和形状感知模型,称为多分支血管形状卷积网络(MVCN),以自适应地学习视网膜血管图像的高分辨率表示,从而捕获其高质量的拓扑和形状信息。我们的流水线包含两个步骤。前一步提出了多分辨率集成模块(Multiple resolution Ensemble Module, MHEM),通过融合视网膜血管图像的尺度不变层次拓扑来增强其高分辨率特征。后者是一种新颖的血管形状卷积,它捕获了从不相关的眼底结构中出现的视网膜血管拓扑。此外,我们将这种拓扑与眼底分离的MVCN是通过使用认知不确定性来动态生成多子标签,而不是手动分离原始标签来区分确定和不确定血管。与现有方法相比,该方法在DRIVE、CHASE_DB1、STARE和HRF数据集上的最高AUC值分别为98.31%、98.80%、98.83%和98.65%,最高ACC值分别为95.83%、96.82%、97.09%和96.66%。我们还使用正确性、完整性和质量度量来评估骨架的相似性。与以前的方法相比,我们的方法的评估指标增加了一倍,从而证明了其有效性。
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来源期刊
Computers in biology and medicine
Computers in biology and medicine 工程技术-工程:生物医学
CiteScore
11.70
自引率
10.40%
发文量
1086
审稿时长
74 days
期刊介绍: Computers in Biology and Medicine is an international forum for sharing groundbreaking advancements in the use of computers in bioscience and medicine. This journal serves as a medium for communicating essential research, instruction, ideas, and information regarding the rapidly evolving field of computer applications in these domains. By encouraging the exchange of knowledge, we aim to facilitate progress and innovation in the utilization of computers in biology and medicine.
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