Promiscuity of an Alcohol-Dependent Hemiterpene Pathway for the In Vivo Production of a Non-Natural Alkylated Tryptophan Derivative

IF 3.7 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS
Anuran K. Gayen, Rachael S. Pitts Hall, Sean Lund and Gavin J. Williams*, 
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Abstract

The prenyl motif determines the biological activity of many natural products. Yet, structural diversification of the prenyl site has been restricted due to the limitations of native biosynthetic pathways to hemiterpenes, the universal isoprenoid building blocks. Previously, we developed the artificial alcohol dependent hemiterpene (ADH) pathway comprising the acid phosphatase PhoN and the isopentenyl kinase IPK to provide natural isoprenoids assembled from hemiterpenes in vivo. Here, we revealed the broad specificity of the first enzyme of the ADH module, PhoN, and a downstream aromatic prenyltransferase. We then showed that the combined promiscuity of the ADH module and prenyltransferase were sufficient to produce a non-natural-alkylated tryptophan derivative in vivo when coupled with the previously described promiscuity of IPK. The short and modular ADH pathway provides a convenient and scalable approach to alkyl-pyrophosphates and facilitates probing the promiscuity of other downstream enzymes involved in isoprenoid biosynthesis without the tedious in vitro preparation of alkyl-pyrophosphates. This sets the stage to leverage the ADH pathway to forward engineer isoprenoid biosynthesis and expand its chemical space accessible to synthetic biology.

Abstract Image

前炔基基团决定了许多天然产物的生物活性。然而,由于原生生物合成途径仅限于通用异戊烯结构单元--半萜烯,前炔基部位的结构多样化一直受到限制。此前,我们开发了由酸性磷酸酶 PhoN 和异戊烯激酶 IPK 组成的人工醇依赖性半萜(ADH)途径,以提供由半萜在体内组装而成的天然异戊烯。在这里,我们揭示了 ADH 模块的第一种酶 PhoN 和下游芳香族前酰转移酶的广泛特异性。然后我们发现,ADH 模块和前酰基转移酶的杂合性与之前描述的 IPK 杂合性相结合,足以在体内产生非天然烷基化的色氨酸衍生物。简短和模块化的 ADH 途径为烷基焦磷酸盐提供了一种方便和可扩展的方法,并有助于探究参与异戊二烯生物合成的其他下游酶的杂合性,而无需繁琐的体外制备烷基焦磷酸盐。这为利用 ADH 途径推进异戊二烯生物合成工程和扩大合成生物学可利用的化学空间奠定了基础。
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来源期刊
CiteScore
8.00
自引率
10.60%
发文量
380
审稿时长
6-12 weeks
期刊介绍: The journal is particularly interested in studies on the design and synthesis of new genetic circuits and gene products; computational methods in the design of systems; and integrative applied approaches to understanding disease and metabolism. Topics may include, but are not limited to: Design and optimization of genetic systems Genetic circuit design and their principles for their organization into programs Computational methods to aid the design of genetic systems Experimental methods to quantify genetic parts, circuits, and metabolic fluxes Genetic parts libraries: their creation, analysis, and ontological representation Protein engineering including computational design Metabolic engineering and cellular manufacturing, including biomass conversion Natural product access, engineering, and production Creative and innovative applications of cellular programming Medical applications, tissue engineering, and the programming of therapeutic cells Minimal cell design and construction Genomics and genome replacement strategies Viral engineering Automated and robotic assembly platforms for synthetic biology DNA synthesis methodologies Metagenomics and synthetic metagenomic analysis Bioinformatics applied to gene discovery, chemoinformatics, and pathway construction Gene optimization Methods for genome-scale measurements of transcription and metabolomics Systems biology and methods to integrate multiple data sources in vitro and cell-free synthetic biology and molecular programming Nucleic acid engineering.
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