Constrained Structure Minimizations on Hyperspheres for Minimum Energy Path Following

IF 5.6 2区 化学 Q1 CHEMISTRY, MEDICINAL
Jorge Alberto Sanchez Alvarez*, Luis López-Sosa, Andreas M. Köster and Patrizia Calaminici*, 
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引用次数: 0

Abstract

In this work, a reliable and robust trust region method for restricted minimizations on hyperspheres is developed. The working equations of this new methodology are presented, together with their validation. The performance and characteristics of this new algorithm are discussed by a constrained minimization on a sphere using a two-dimensional Quapp model surface. The obtained results show that the proposed method for minimizations on hyperspheres guarantees convergence to constrained minima. Its enhanced numerical stability permits tight convergence criteria for constrained minimizations. The application of the new restricted minimizer in the framework of the hierarchical transition state finder and for the calculation of intrinsic reaction coordinates for 38 chemical reactions demonstrates its robustness and efficiency.

超球上最小能量路径跟踪的约束结构最小化
在这项工作中,针对超球上的受限最小化,开发了一种可靠、稳健的信任区域方法。本文介绍了这一新方法的工作方程,并对其进行了验证。通过使用二维 Quapp 模型曲面在球面上进行受限最小化,讨论了这一新算法的性能和特点。结果表明,所提出的超球面最小化方法能保证收敛到受约束的最小值。其增强的数值稳定性允许约束最小化达到严格的收敛标准。新的受限最小化方法在分层过渡态寻找器框架中的应用,以及在计算 38 个化学反应的内在反应坐标中的应用,都证明了它的稳健性和高效性。
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来源期刊
CiteScore
9.80
自引率
10.70%
发文量
529
审稿时长
1.4 months
期刊介绍: The Journal of Chemical Information and Modeling publishes papers reporting new methodology and/or important applications in the fields of chemical informatics and molecular modeling. Specific topics include the representation and computer-based searching of chemical databases, molecular modeling, computer-aided molecular design of new materials, catalysts, or ligands, development of new computational methods or efficient algorithms for chemical software, and biopharmaceutical chemistry including analyses of biological activity and other issues related to drug discovery. Astute chemists, computer scientists, and information specialists look to this monthly’s insightful research studies, programming innovations, and software reviews to keep current with advances in this integral, multidisciplinary field. As a subscriber you’ll stay abreast of database search systems, use of graph theory in chemical problems, substructure search systems, pattern recognition and clustering, analysis of chemical and physical data, molecular modeling, graphics and natural language interfaces, bibliometric and citation analysis, and synthesis design and reactions databases.
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