Historical Use of Markov Model and Posterior Predictive Checks in Pharmacometrics

IF 3.1 3区 医学 Q2 PHARMACOLOGY & PHARMACY
Pascal Girard, Helen Kastrissios
{"title":"Historical Use of Markov Model and Posterior Predictive Checks in Pharmacometrics","authors":"Pascal Girard,&nbsp;Helen Kastrissios","doi":"10.1002/psp4.70031","DOIUrl":null,"url":null,"abstract":"<p>We would like to congratulate the authors for their excellent “<i>Tutorial on pharmacometric Markov models</i>” published in a recent issue of CPT-PSP [<span>1</span>]. Their publication emphasizes the increasing use of such models in the field of pharmacometrics, is very complete, and presents in one single paper the theoretical framework of discret-time Markov model (DTMM), continuous-time Markov model, and Hidden Markov model.</p><p>However, by restricting their Pubmed search to <b>“</b>Markov pharmacometric” the authors missed two important seminal papers in this field, both authored by Girard, Sheiner, Kastrissios and Blashke, related to the analysis of dosing regimen compliance (or adherence) data and population pharmacokinetic (pop-PK) modeling [<span>2, 3</span>]. The first paper [<span>2</span>] addressed via DTMM and pop-PK simulations the question of the loss of information (bias and precision) in pop-PK analysis when using partial information on patients' dose intakes before concentration measurements versus using the full dosing history as provided by an electronic device. The paper concluded that the use of a limited number of dose records (chosen based on an a priori estimate of the half-life of the drug) would be sufficient to get unbiased and precise PK parameter estimates. Interestingly, the sequence of dose intakes was simulated using a DTMM that was calibrated using real data from electronically monitored patients, which to our best knowledge is the first time a Markov model was used in the field of pharmacometrics.</p><p>For <i>p</i>(<i>n</i>), a Markov model was postulated and logits were derived with proper constraints for <i>n</i> = 0, 1, or &gt; 1. The full log likelihood was derived, and parameter estimation was performed with the Laplacian method in NONMEM. The covariates, time of the day (morning, mid-day, evening), weekend days, and age were found to be significant. Figure 4 of that paper visualizes observed dosing patterns (corresponding to the number of times the pill bottle was opened by the patients) [<span>3</span>] (reproduced here as Figure 1). Interestingly, it is quite similar to panels (a) and (b) of Figure 1 of the tutorial paper that shows a visualization to explore the Markovian features of a categorical response, although the latter paper goes one step further by showing a correlation plot of current versus previous response [<span>1</span>].</p><p>The original work [<span>3</span>] was published in a statistical journal and was written based on a statistical background rather than a pharmacometric one. However, it is an important reminder that our work [<span>2, 3</span>] was supervised and guided by Prof Lewis B. Sheiner, a giant in the field of pharmacometrics, even before it became a newly coined discipline in 1982 [<span>4</span>]. Coming back to our original published work [<span>3</span>], it is also worth noting that this paper was the first time where pharmacometricians used the ‘posterior predictive check’ concept for model checking and qualification, a concept borrowed from Bayesian statisticians Gelman et al. [<span>5</span>].</p><p>All of this does not diminish in any way the merits and the benefits for the pharmacometric community of the current tutorial on Markov models in pharmacometrics [<span>1</span>], which will be of great help for a new generation of pharmacometricians, and for this we would like to thank Qing Xi Ooi, Elodie Plan, and Martin Bergstrand for their valuable contribution.</p><p>Editor's Note: The authors submitted this letter in memory of Prof. Lewis B. Sheiner.</p><p>The authors declare no conflicts of interest.</p>","PeriodicalId":10774,"journal":{"name":"CPT: Pharmacometrics & Systems Pharmacology","volume":"14 5","pages":"817-818"},"PeriodicalIF":3.1000,"publicationDate":"2025-04-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/psp4.70031","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"CPT: Pharmacometrics & Systems Pharmacology","FirstCategoryId":"3","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/psp4.70031","RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"PHARMACOLOGY & PHARMACY","Score":null,"Total":0}
引用次数: 0

Abstract

We would like to congratulate the authors for their excellent “Tutorial on pharmacometric Markov models” published in a recent issue of CPT-PSP [1]. Their publication emphasizes the increasing use of such models in the field of pharmacometrics, is very complete, and presents in one single paper the theoretical framework of discret-time Markov model (DTMM), continuous-time Markov model, and Hidden Markov model.

However, by restricting their Pubmed search to Markov pharmacometric” the authors missed two important seminal papers in this field, both authored by Girard, Sheiner, Kastrissios and Blashke, related to the analysis of dosing regimen compliance (or adherence) data and population pharmacokinetic (pop-PK) modeling [2, 3]. The first paper [2] addressed via DTMM and pop-PK simulations the question of the loss of information (bias and precision) in pop-PK analysis when using partial information on patients' dose intakes before concentration measurements versus using the full dosing history as provided by an electronic device. The paper concluded that the use of a limited number of dose records (chosen based on an a priori estimate of the half-life of the drug) would be sufficient to get unbiased and precise PK parameter estimates. Interestingly, the sequence of dose intakes was simulated using a DTMM that was calibrated using real data from electronically monitored patients, which to our best knowledge is the first time a Markov model was used in the field of pharmacometrics.

For p(n), a Markov model was postulated and logits were derived with proper constraints for n = 0, 1, or > 1. The full log likelihood was derived, and parameter estimation was performed with the Laplacian method in NONMEM. The covariates, time of the day (morning, mid-day, evening), weekend days, and age were found to be significant. Figure 4 of that paper visualizes observed dosing patterns (corresponding to the number of times the pill bottle was opened by the patients) [3] (reproduced here as Figure 1). Interestingly, it is quite similar to panels (a) and (b) of Figure 1 of the tutorial paper that shows a visualization to explore the Markovian features of a categorical response, although the latter paper goes one step further by showing a correlation plot of current versus previous response [1].

The original work [3] was published in a statistical journal and was written based on a statistical background rather than a pharmacometric one. However, it is an important reminder that our work [2, 3] was supervised and guided by Prof Lewis B. Sheiner, a giant in the field of pharmacometrics, even before it became a newly coined discipline in 1982 [4]. Coming back to our original published work [3], it is also worth noting that this paper was the first time where pharmacometricians used the ‘posterior predictive check’ concept for model checking and qualification, a concept borrowed from Bayesian statisticians Gelman et al. [5].

All of this does not diminish in any way the merits and the benefits for the pharmacometric community of the current tutorial on Markov models in pharmacometrics [1], which will be of great help for a new generation of pharmacometricians, and for this we would like to thank Qing Xi Ooi, Elodie Plan, and Martin Bergstrand for their valuable contribution.

Editor's Note: The authors submitted this letter in memory of Prof. Lewis B. Sheiner.

The authors declare no conflicts of interest.

马尔可夫模型和后验预测检验在药物计量学中的历史应用。
我们要祝贺作者在最近一期的CPT-PSP[1]上发表了他们出色的“药物计量马尔可夫模型教程”。他们的出版物强调了这些模型在药物计量学领域的越来越多的使用,非常完整,并在一篇论文中提出了离散时间马尔可夫模型(DTMM),连续时间马尔可夫模型和隐马尔可夫模型的理论框架。然而,由于将他们的Pubmed搜索限制在“Markov药物计量学”,作者错过了该领域两篇重要的开创性论文,这两篇论文均由Girard、Sheiner、Kastrissios和Blashke撰写,涉及给药方案依从性(或依从性)数据分析和群体药代动力学(pop-PK)建模[2,3]。第一篇论文通过DTMM和pop-PK模拟解决了pop-PK分析中使用浓度测量前患者剂量摄入的部分信息与使用电子设备提供的完整给药史时信息丢失(偏差和精度)的问题。本文的结论是,使用有限数量的剂量记录(根据药物半衰期的先验估计选择)将足以获得无偏和精确的PK参数估计。有趣的是,使用电子监测患者的真实数据校准的DTMM模拟了剂量摄入顺序,据我们所知,这是马尔可夫模型首次在药物计量学领域使用。对于p(n),假设一个马尔可夫模型,并在n = 0,1或>; 1的适当约束下推导出对数。推导了全对数似然函数,并用拉普拉斯方法进行了参数估计。协变量,一天中的时间(早上,中午,晚上),周末和年龄被发现是显著的。该论文的图4可视化显示了观察到的给药模式(对应于患者打开药瓶的次数)[3](此处复制为图1)。有趣的是,它与教程论文图1的面板(a)和(b)非常相似,图1显示了探索分类响应的马尔可夫特征的可视化,尽管后一篇论文更进一步,显示了当前响应与先前响应[1]的相关性图。最初的工作[3]发表在统计杂志上,是基于统计背景而不是药物计量学背景编写的。然而,这是一个重要的提醒,我们的工作[2,3]是由Lewis B. Sheiner教授监督和指导的,他是药物计量学领域的一位巨人,甚至在1982年药物计量学成为一门新学科之前。回到我们最初发表的工作[3],同样值得注意的是,这篇论文是药物计量学家第一次使用“后验预测检查”概念进行模型检查和鉴定,这是一个借用贝叶斯统计学家Gelman等人的概念。[3]。所有这些都不会以任何方式减少当前药物计量学中马尔可夫模型教程的优点和益处,这将对新一代药物计量学家有很大的帮助,为此我们要感谢Qing Xi Ooi, Elodie Plan和Martin Bergstrand的宝贵贡献。编者注:作者写这封信是为了纪念Lewis B. Sheiner教授。作者声明无利益冲突。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
CiteScore
5.00
自引率
11.40%
发文量
146
审稿时长
8 weeks
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信