{"title":"AI/ML methodologies and the future-will they be successful in designing the next generation of new chemical entities?","authors":"Rachelle J. Bienstock","doi":"10.1186/s13321-025-00995-5","DOIUrl":null,"url":null,"abstract":"<div><p>Cheminformatics and chemical databases are essential to drug discovery. However, machine learning (ML) and artificial intelligence (AI) methodologies are changing the way in which chemical data is used. How will the use of chemical data change in drug discovery moving forward? How do the new ML methods in molecular property prediction, hit and lead and target identification and structure prediction differ and compare with previous computational methods? Will new ML methodologies improve chemical diversity in ligand design, and offer computational enhancements. There are still many advantages to physics based methods and they offer something lacking in ML/ AI based methods. Additionally, ML training methods often give the best results when experimental assay measurements are fed back into the model. Often modeling and experimental methods are not diametrically opposed but offer the greatest advantage when used complementary.</p></div>","PeriodicalId":617,"journal":{"name":"Journal of Cheminformatics","volume":"17 1","pages":""},"PeriodicalIF":5.7000,"publicationDate":"2025-04-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-025-00995-5","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Cheminformatics","FirstCategoryId":"92","ListUrlMain":"https://link.springer.com/article/10.1186/s13321-025-00995-5","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0
Abstract
Cheminformatics and chemical databases are essential to drug discovery. However, machine learning (ML) and artificial intelligence (AI) methodologies are changing the way in which chemical data is used. How will the use of chemical data change in drug discovery moving forward? How do the new ML methods in molecular property prediction, hit and lead and target identification and structure prediction differ and compare with previous computational methods? Will new ML methodologies improve chemical diversity in ligand design, and offer computational enhancements. There are still many advantages to physics based methods and they offer something lacking in ML/ AI based methods. Additionally, ML training methods often give the best results when experimental assay measurements are fed back into the model. Often modeling and experimental methods are not diametrically opposed but offer the greatest advantage when used complementary.
期刊介绍:
Journal of Cheminformatics is an open access journal publishing original peer-reviewed research in all aspects of cheminformatics and molecular modelling.
Coverage includes, but is not limited to:
chemical information systems, software and databases, and molecular modelling,
chemical structure representations and their use in structure, substructure, and similarity searching of chemical substance and chemical reaction databases,
computer and molecular graphics, computer-aided molecular design, expert systems, QSAR, and data mining techniques.