{"title":"Identification of sex-related genes across bivalves reveals key genes in gonad development and sex reversal","authors":"Yifan Li, Huiqi Li, Meizheng Chen, Yetao Zeng, Jianming Ye, Xixi Duan, Weili Wang, Hongkuan Zhang, Huaiping Zheng","doi":"10.1016/j.cbd.2025.101506","DOIUrl":null,"url":null,"abstract":"<div><div>The complex and diverse sexual reproduction patterns and multiple sex types of mollusks make it important to elucidate their sex mechanisms. Recent studies have demonstrated the crucial roles of <em>Dmrt</em>, <em>STAT</em>, and <em>Sox</em> genes in animal sex determination/differentiation. However, the comprehensive comparison of these genes in different bivalves is limited. In this study, 33 bivalves were analyzed to investigate the sequence characteristics, phylogenetic relationships, and expression profiles of these genes. Total of 112 Dmrt genes, 88 STAT genes and 229 Sox genes were identified in 33 bivalves. Phylogenetic analysis grouped the <em>Dmrt</em>, <em>STAT</em>, and <em>Sox</em> genes into 4, 3, and 7 groups, respectively. By comparing gene family number and sequence differences, we observed expansion and contraction in the <em>Dmrt</em> and <em>STAT</em> family genes, as well as sequence variations in <em>Dmrt-01</em> and <em>SoxH</em> among different bivalves, suggesting their molecular adaptations to diverse sexual mechanisms. Expression profiles of these genes in noble scallop <em>Chlamys nobilis</em> revealed that <em>CnDmrt-01</em> and <em>CnSox-07</em> (<em>SoxH</em>) is predominantly expressed in testis, suggesting their male-specific role in gonad development and maturation. A higher expression level of <em>CnSox-01/03</em> (<em>Sox-B1/C</em>) in ovary suggest their essential role in ovary development<em>.</em> These genes also showed significantly higher expression level during sex reversal, suggesting their crucial roles in this process. Additionally, transcriptome data from other bivalves further support that the sexual expression patterns of <em>Dmrt-01</em> and <em>Sox-B1/C/H</em> are conserved across most bivalves. The results of this study will provide insights into these sex-related genes and useful information to better understand mechanisms of gonad development and sex reversal in mollusc.</div></div>","PeriodicalId":55235,"journal":{"name":"Comparative Biochemistry and Physiology D-Genomics & Proteomics","volume":"55 ","pages":"Article 101506"},"PeriodicalIF":2.2000,"publicationDate":"2025-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Comparative Biochemistry and Physiology D-Genomics & Proteomics","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1744117X25000942","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
The complex and diverse sexual reproduction patterns and multiple sex types of mollusks make it important to elucidate their sex mechanisms. Recent studies have demonstrated the crucial roles of Dmrt, STAT, and Sox genes in animal sex determination/differentiation. However, the comprehensive comparison of these genes in different bivalves is limited. In this study, 33 bivalves were analyzed to investigate the sequence characteristics, phylogenetic relationships, and expression profiles of these genes. Total of 112 Dmrt genes, 88 STAT genes and 229 Sox genes were identified in 33 bivalves. Phylogenetic analysis grouped the Dmrt, STAT, and Sox genes into 4, 3, and 7 groups, respectively. By comparing gene family number and sequence differences, we observed expansion and contraction in the Dmrt and STAT family genes, as well as sequence variations in Dmrt-01 and SoxH among different bivalves, suggesting their molecular adaptations to diverse sexual mechanisms. Expression profiles of these genes in noble scallop Chlamys nobilis revealed that CnDmrt-01 and CnSox-07 (SoxH) is predominantly expressed in testis, suggesting their male-specific role in gonad development and maturation. A higher expression level of CnSox-01/03 (Sox-B1/C) in ovary suggest their essential role in ovary development. These genes also showed significantly higher expression level during sex reversal, suggesting their crucial roles in this process. Additionally, transcriptome data from other bivalves further support that the sexual expression patterns of Dmrt-01 and Sox-B1/C/H are conserved across most bivalves. The results of this study will provide insights into these sex-related genes and useful information to better understand mechanisms of gonad development and sex reversal in mollusc.
期刊介绍:
Comparative Biochemistry & Physiology (CBP) publishes papers in comparative, environmental and evolutionary physiology.
Part D: Genomics and Proteomics (CBPD), focuses on “omics” approaches to physiology, including comparative and functional genomics, metagenomics, transcriptomics, proteomics, metabolomics, and lipidomics. Most studies employ “omics” and/or system biology to test specific hypotheses about molecular and biochemical mechanisms underlying physiological responses to the environment. We encourage papers that address fundamental questions in comparative physiology and biochemistry rather than studies with a focus that is purely technical, methodological or descriptive in nature.