TSNet: Vessel segmentation with sequential frame temporal information in coronary angiography

IF 5.4 2区 医学 Q1 ENGINEERING, BIOMEDICAL
Hui Yu , Hui Gao , Guang Li , Zewei Qin , Dagong Jia , Guangpu Wang , Shuo Wang
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引用次数: 0

Abstract

Objective

When using single-frame images for coronary vessel segmentation, the small size and complex structure of the vessels often lead to over-segmentation and mis-segmentation. Additionally, limited information from low-quality images result in disrupting the vascular topology. To address this, we introduce temporal information from coronary angiography sequences to aid in segmentation and improve accuracy.

Methods

We establish a dataset SqCS specialized for coronary angiography sequence segmentation and propose a time series-based coronary angiography segmentation network TSNet. Specifically, our proposed TSNet is a multi-input single-output end-to-end U-shaped network that utilizes multiple encoders for simultaneous extraction of spatial features from input sequence frames. It incorporates an edge enhancement method for segmented frames and employs the Temporal and Spatial Attention Unit (TSAU) for refined extraction of temporal and spatial information and fusion of multi-frame features. Our code is publicly available at https://github.com/huigao-II/TSNet.

Results

We validated TSNet on our SqCS dataset, achieving a Dice score of 0.8966, Acc of 0.9906, IoU of 0.8127, clDice of 0.9354, VCA of 1.9027, BIOU of 0.3565 and VCA of 1.9072. Conclusion: Our method enhances pixel-wise accuracy while addressing vessel discontinuities in low-contrast regions common in single-frame segmentation. It preserves vascular topology and significantly improves edge accuracy.

Significance

Our SqCS dataset provides a foundation for sequence-based coronary angiography vessel segmentation research. The segmentation model trained using our method lays the groundwork for accurate clinical diagnosis and treatment decisions in coronary artery disease.
冠状动脉造影中时序时序信息的血管分割
目的当使用单帧图像进行冠状动脉血管分割时,血管的小尺寸和复杂结构往往会导致过度分割和错误分割。此外,低质量图像的有限信息也会破坏血管拓扑结构。为了解决这个问题,我们引入了冠状动脉造影序列的时间信息来帮助分割并提高准确性。方法我们建立了一个专门用于冠状动脉造影序列分割的数据集 SqCS,并提出了基于时间序列的冠状动脉造影分割网络 TSNet。具体来说,我们提出的 TSNet 是一个多输入单输出端到端 U 型网络,利用多个编码器同时提取输入序列帧的空间特征。它采用边缘增强法对帧进行分割,并利用时空注意单元(TSAU)对时间和空间信息进行精细提取,以及对多帧特征进行融合。我们的代码已在 https://github.com/huigao-II/TSNet.ResultsWe 上公开发布,在我们的 SqCS 数据集上验证了 TSNet,其 Dice 得分为 0.8966,Acc 为 0.9906,IoU 为 0.8127,clDice 为 0.9354,VCA 为 1.9027,BIOU 为 0.3565,VCA 为 1.9072。结论我们的方法提高了像素精度,同时解决了单帧分割中常见的低对比度区域的血管不连续性问题。我们的 SqCS 数据集为基于序列的冠状动脉造影血管分割研究奠定了基础。使用我们的方法训练的分割模型为冠状动脉疾病的准确临床诊断和治疗决策奠定了基础。
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来源期刊
CiteScore
10.70
自引率
3.50%
发文量
71
审稿时长
26 days
期刊介绍: The purpose of the journal Computerized Medical Imaging and Graphics is to act as a source for the exchange of research results concerning algorithmic advances, development, and application of digital imaging in disease detection, diagnosis, intervention, prevention, precision medicine, and population health. Included in the journal will be articles on novel computerized imaging or visualization techniques, including artificial intelligence and machine learning, augmented reality for surgical planning and guidance, big biomedical data visualization, computer-aided diagnosis, computerized-robotic surgery, image-guided therapy, imaging scanning and reconstruction, mobile and tele-imaging, radiomics, and imaging integration and modeling with other information relevant to digital health. The types of biomedical imaging include: magnetic resonance, computed tomography, ultrasound, nuclear medicine, X-ray, microwave, optical and multi-photon microscopy, video and sensory imaging, and the convergence of biomedical images with other non-imaging datasets.
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