Clc-db: an open-source online database of chiral ligands and catalysts

IF 7.1 2区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY
Gufeng Yu, Kaiwen Yu, Xi Wang, Chenxi Zhang, Yicong Luo, Xiaohong Huo, Yang Yang
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引用次数: 0

Abstract

The design and optimization of chiral ligands and catalysts are fundamental to advancing asymmetric catalysis, a critical area in organic chemistry with wide-ranging impacts across scientific disciplines. Traditional experimental approaches, while essential, are often hindered by their slow pace and complexity. Recent advancements have demonstrated that computational methods, particularly machine learning, offer transformative potential by significantly accelerating these processes through enhanced prediction and modeling capabilities. However, limitations such as data scarcity and model inaccuracies continue to challenge their broader application. To address these issues, we present the Chiral Ligand and Catalyst Database (CLC-DB), the first open-source, comprehensive database specifically designed for chiral ligands and catalysts. CLC-DB contains 1,861 molecules spanning 32 distinctive chiral ligand and catalyst categories, with each entry annotated with 34 types of curated information, validated by chemical experts and linked to authoritative chemical databases. The database features a user-friendly interface that supports efficient single and batch searches, as well as an integrated, high-performance online molecular clustering tool to facilitate computational analyses. CLC-DB is freely accessible at https://compbio.sjtu.edu.cn/services/clc-db, where all data are available for download.

开源的手性配体和催化剂在线数据库
手性配体和催化剂的设计和优化是推进不对称催化的基础,不对称催化是有机化学的一个关键领域,在科学学科中具有广泛的影响。传统的实验方法虽然必不可少,但往往因其缓慢的速度和复杂性而受到阻碍。最近的进展表明,计算方法,特别是机器学习,通过增强预测和建模能力,显着加速这些过程,提供了变革潜力。然而,数据稀缺和模型不准确等限制继续挑战着它们更广泛的应用。为了解决这些问题,我们提出了手性配体和催化剂数据库(CLC-DB),这是第一个专门为手性配体和催化剂设计的开源综合数据库。CLC-DB包含1,861个分子,跨越32种不同的手性配体和催化剂类别,每个条目都有34种分类信息注释,由化学专家验证并与权威化学数据库相连。该数据库具有用户友好的界面,支持高效的单个和批量搜索,以及集成的高性能在线分子聚类工具,以促进计算分析。可以在https://compbio.sjtu.edu.cn/services/clc-db上免费访问CLC-DB,在那里可以下载所有数据。本文介绍了CLC-DB,一个致力于手性配体和催化剂的创新开源数据库,包含32种不同类型的1,861个分子,每个分子提供34种类型的注释数据。该资源显著提高了不对称催化的数据可访问性和质量。凭借其集成的分子聚类工具和用户友好的平台,CLC-DB为推进新型手性配体和催化剂的设计和优化提供了宝贵的资源。
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来源期刊
Journal of Cheminformatics
Journal of Cheminformatics CHEMISTRY, MULTIDISCIPLINARY-COMPUTER SCIENCE, INFORMATION SYSTEMS
CiteScore
14.10
自引率
7.00%
发文量
82
审稿时长
3 months
期刊介绍: Journal of Cheminformatics is an open access journal publishing original peer-reviewed research in all aspects of cheminformatics and molecular modelling. Coverage includes, but is not limited to: chemical information systems, software and databases, and molecular modelling, chemical structure representations and their use in structure, substructure, and similarity searching of chemical substance and chemical reaction databases, computer and molecular graphics, computer-aided molecular design, expert systems, QSAR, and data mining techniques.
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