{"title":"The Development Landscape of Large Language Models for Biomedical Applications.","authors":"Zhiyuan Cao, Vipina K Keloth, Qianqian Xie, Lingfei Qian, Yuntian Liu, Yan Wang, Rui Shi, Weipeng Zhou, Gui Yang, Jeffrey Zhang, Xueqing Peng, Ethan Zhen, Ruey-Ling Weng, Qingyu Chen, Hua Xu","doi":"10.1146/annurev-biodatasci-102224-074736","DOIUrl":null,"url":null,"abstract":"<p><p>Large language models (LLMs) have become powerful tools for biomedical applications, offering potential to transform healthcare and medical research. Since the release of ChatGPT in 2022, there has been a surge in LLMs for diverse biomedical applications. This review examines the landscape of text-based biomedical LLM development, analyzing model characteristics (e.g., architecture), development processes (e.g., training strategy), and applications (e.g., chatbots). Following PRISMA guidelines, 82 articles were selected out of 5,512 articles since 2022 that met our rigorous criteria, including the requirement of using biomedical data when training LLMs. Findings highlight the predominant use of decoder-only architectures such as Llama 7B, prevalence of task-specific fine-tuning, and reliance on biomedical literature for training. Challenges persist in balancing data openness with privacy concerns and detailing model development, including computational resources used. Future efforts would benefit from multimodal integration, LLMs for specialized medical applications, and improved data sharing and model accessibility.</p>","PeriodicalId":29775,"journal":{"name":"Annual Review of Biomedical Data Science","volume":" ","pages":""},"PeriodicalIF":7.0000,"publicationDate":"2025-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Annual Review of Biomedical Data Science","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1146/annurev-biodatasci-102224-074736","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"MATHEMATICAL & COMPUTATIONAL BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Large language models (LLMs) have become powerful tools for biomedical applications, offering potential to transform healthcare and medical research. Since the release of ChatGPT in 2022, there has been a surge in LLMs for diverse biomedical applications. This review examines the landscape of text-based biomedical LLM development, analyzing model characteristics (e.g., architecture), development processes (e.g., training strategy), and applications (e.g., chatbots). Following PRISMA guidelines, 82 articles were selected out of 5,512 articles since 2022 that met our rigorous criteria, including the requirement of using biomedical data when training LLMs. Findings highlight the predominant use of decoder-only architectures such as Llama 7B, prevalence of task-specific fine-tuning, and reliance on biomedical literature for training. Challenges persist in balancing data openness with privacy concerns and detailing model development, including computational resources used. Future efforts would benefit from multimodal integration, LLMs for specialized medical applications, and improved data sharing and model accessibility.
期刊介绍:
The Annual Review of Biomedical Data Science provides comprehensive expert reviews in biomedical data science, focusing on advanced methods to store, retrieve, analyze, and organize biomedical data and knowledge. The scope of the journal encompasses informatics, computational, artificial intelligence (AI), and statistical approaches to biomedical data, including the sub-fields of bioinformatics, computational biology, biomedical informatics, clinical and clinical research informatics, biostatistics, and imaging informatics. The mission of the journal is to identify both emerging and established areas of biomedical data science, and the leaders in these fields.